RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ANO7Q6IWH7 933 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 XKR5Q6UX68 686 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 SLC22A15Q8IZD6 547 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 HIST1H2AHQ96KK5 128 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 HIST1H2AJQ99878 128 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 H2AFJQ9BTM1 129 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 TRIM54Q9BYV2 358 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 RASSF4Q9H2L5 321 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 TCF7L2Q9NQB0 619 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 TM7SF3Q9NS93 570 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 ANKRD12Q6UB98 2062 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 E9PBE3 544 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 H3BM21 787 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 LIN7AO14910 233 aaPredicted RBP20.8■□□□□ 0.92
CLN3-209ENST00000561689 CHUKO15111 745 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 SLC16A5O15375 505 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 CCNT2O60583 730 aaKnown RBP20.8■□□□□ 0.92
CLN3-209ENST00000561689 KLHL41O60662 606 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 MLYCDO95822 493 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 ENO2P09104 434 aaPredicted RBP20.8■□□□□ 0.92
CLN3-209ENST00000561689 TEAD1P28347 426 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 ARHGAP8P85298 464 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 BTKQ06187 659 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 SP140Q13342 867 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 SYT13Q7L8C5 426 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 GOLGA7Q7Z5G4 137 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 SYVN1Q86TM6 617 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 CLYBLQ8N0X4 340 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 AFAP1L2Q8N4X5 818 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 TEX9Q8N6V9 391 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 DCBLD1Q8N8Z6 715 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 OR2L2Q8NH16 312 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 FAR2Q96K12 515 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 NOL11Q9H8H0 719 aaKnown RBP20.8■□□□□ 0.92
CLN3-209ENST00000561689 ITM2CQ9NQX7 267 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 PHPT1Q9NRX4 125 aaPredicted RBP20.8■□□□□ 0.92
CLN3-209ENST00000561689 SLC23A2Q9UGH3 650 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 SLC12A4Q9UP95 1085 aa20.8■□□□□ 0.92
CLN3-209ENST00000561689 FAM170BA6NMN3 283 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CCDC22O60826 627 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CBX6O95503 412 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 SERPINA6P08185 405 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CYP2A7P20853 494 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 FZD5Q13467 585 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 UBAP2LQ14157 1087 aaKnown RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 LRRC32Q14392 662 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 HABP4Q5JVS0 413 aaKnown RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 FAM83HQ6ZRV2 1179 aaPredicted RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 SIX5Q8N196 739 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 OR52B6Q8NGF0 335 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 OR56A4Q8NGH8 313 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 MCOLN3Q8TDD5 553 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CD244Q9BZW8 370 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 WNT16Q9UBV4 365 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 ZNHIT2Q9UHR6 403 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 ZNF225Q9UK10 706 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 MRPS17Q9Y2R5 130 aaKnown RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 DOCK9Q9BZ29 2069 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 C17orf113A0A1B0GUU1 675 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 PABPN1LA6NDY0 278 aaKnown RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 MGAT4DA6NG13 374 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 TRPC5OSA6NMA1 111 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 ARHGEF33A8MVX0 844 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 AZIN1O14977 448 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 GSTM1P09488 218 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 MYCLP1P12525 358 aaPredicted RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 SCTRP47872 440 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CLDN2P57739 230 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 NAA20P61599 178 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 GSTM4Q03013 218 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 GTF2H2Q13888 395 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 UGT3A2Q3SY77 523 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 SPDYAQ5MJ70 313 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 GTF2H2CQ6P1K8 395 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 LRRTM4Q86VH4 590 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 RASGRP3Q8IV61 690 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 SYNPOQ8N3V7 929 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 OR2T34Q8NGX1 318 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 MAFAQ8NHW3 353 aaPredicted RBP20.79■□□□□ 0.92
CLN3-209ENST00000561689 CDK15Q96Q40 435 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 LTB4R2Q9NPC1 389 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CIDEBQ9UHD4 219 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 CA5BQ9Y2D0 317 aa20.79■□□□□ 0.92
CLN3-209ENST00000561689 LRRC72A6NJI9 287 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 CHURC1-FNTBB4DL54 471 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 PSIP1O75475 530 aaKnown RBP20.78■□□□□ 0.92
CLN3-209ENST00000561689 FUCA1P04066 466 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 FGF4P08620 206 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 NCF2P19878 526 aaPredicted RBP20.78■□□□□ 0.92
CLN3-209ENST00000561689 ZXDCQ2QGD7 858 aaPredicted RBP20.78■□□□□ 0.92
CLN3-209ENST00000561689 LSM12Q3MHD2 195 aaKnown RBP20.78■□□□□ 0.92
CLN3-209ENST00000561689 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.78■□□□□ 0.92
CLN3-209ENST00000561689 NXNQ6DKJ4 435 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 AMZ2Q86W34 360 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 HHIPQ96QV1 700 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 SAR1AQ9NR31 198 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 USP36Q9P275 1121 aaKnown RBP20.78■□□□□ 0.92
CLN3-209ENST00000561689 OPTCQ9UBM4 332 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 DNAJC15Q9Y5T4 150 aa20.78■□□□□ 0.92
CLN3-209ENST00000561689 KANSL1LA0AUZ9 987 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms