RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ARGLU1Q9NWB6 273 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 LRIT1Q9P2V4 623 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 ST14Q9Y5Y6 855 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 V9GYY5 206 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 ASCC3Q8N3C0 2202 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 IQANK1A0A1B0GTG1 560 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM221BA6H8Z2 402 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 LILRA5A6NI73 299 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 C1QAP02745 245 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 ITGA2BP08514 1039 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 MYBL2P10244 700 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 FDXRP22570 491 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 USP10Q14694 798 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SMAD1Q15797 465 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SEPT7Q16181 437 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 RPE65Q16518 533 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM83HQ6ZRV2 1179 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 KRT222Q8N1A0 295 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 MYO1HQ8N1T3 1032 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 KYQ8NBH2 561 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC37A2Q8TED4 501 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SKA2Q8WVK7 121 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 GRAMD1AQ96CP6 724 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 PAFAH2Q99487 392 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC38A3Q99624 504 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 GPR21Q99679 349 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 ABCG4Q9H172 646 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 RRAGDQ9NQL2 400 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SMYD2Q9NRG4 433 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 SIRPGQ9P1W8 387 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 ASF1AQ9Y294 204 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 BTBD3Q9Y2F9 522 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 PSAT1Q9Y617 370 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM208BQ5VWN6 2430 aa17.11■□□□□ 0.33
CLSTN3-210ENST00000540931 BPTFQ12830 3046 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 ZNF839A8K0R7 811 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 IQCF5A8MTL0 148 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 CXorf49A8MYA2 514 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 MATN2O00339 956 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC16A5O15375 505 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 RFPL3O75679 317 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 TCEA3O75764 348 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 CATP04040 527 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 C8GP07360 202 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 NUDT17P0C025 328 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 BRAFP15056 766 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 ACADLP28330 430 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 HSD17B2P37059 387 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 UBE2IP63279 158 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 SP140Q13342 867 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 SQSTM1Q13501 440 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 TMEM26Q6ZUK4 368 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 RIBC1Q8N443 379 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 ACVR1CQ8NER5 493 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 OR10G6Q8NH81 332 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 OR5K2Q8NHB8 316 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 CD200R1Q8TD46 325 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 HNRNPLLQ8WVV9 542 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 RAD51AP1Q96B01 352 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 CCDC97Q96F63 343 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 CABS1Q96KC9 395 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 TRIM54Q9BYV2 358 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 ROPN1BQ9BZX4 212 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 KIR3DX1Q9H7L2 352 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 ROPN1Q9HAT0 212 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC40A1Q9NP59 571 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 IMP3Q9NV31 184 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM8A1Q9UBU6 413 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 PSMD13Q9UNM6 376 aa17.1■□□□□ 0.33
CLSTN3-210ENST00000540931 CPED1A4D0V7 1026 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 TMX2-CTNND1H3BSU7 103 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 CTIFO43310 598 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 ZBTB14O43829 449 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 MATN4O95460 622 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 SNRPAP09012 282 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 ITGB6P18564 788 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 MAP4P27816 1152 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC19A1P41440 591 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 NOVA1P51513 510 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 RAB10P61026 200 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 CLCA4Q14CN2 919 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 TCEA2Q15560 299 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 UAP1Q16222 522 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 TAF1BQ53T94 588 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 ADGRD1Q6QNK2 874 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 LCA5Q86VQ0 697 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 TDRPQ86YL5 185 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 DCUN1D3Q8IWE4 304 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 CACTIN-AS1Q8N1I8 211 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 FBXO15Q8NCQ5 510 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 DEFB124Q8NES8 71 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 MYRIPQ8NFW9 859 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 IFI44Q8TCB0 444 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 AHCYL2Q96HN2 611 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 FERD3LQ96RJ6 166 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 INSM2Q96T92 566 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 NDNQ99608 321 aa17.09■□□□□ 0.33
CLSTN3-210ENST00000540931 TFB2MQ9H5Q4 396 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms