RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 AQP12BA6NM10 295 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 ARPC2O15144 300 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 CPNE3O75131 537 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 SLC2A3P11169 496 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 PCNAP12004 261 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 ATF4P18848 351 aaPredicted RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 HOXC13P31276 330 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 RFC2P35250 354 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 KIF19Q2TAC6 998 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 MARC1Q5VT66 337 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 TIGD7Q6NT04 549 aaPredicted RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 SLC41A1Q8IVJ1 513 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 AQP12AQ8IXF9 295 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 FAM126BQ8IXS8 530 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 LSMEM2Q8N112 164 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 METTL4Q8N3J2 472 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 SVOPQ8N4V2 548 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 SIMC1Q8NDZ2 872 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 MRGPRX2Q96LB1 330 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 BEX2Q9BXY8 128 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.75□□□□□ -0.21
LIG1-203ENST00000536218 RUVBL2Q9Y230 463 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 ACTL7AQ9Y615 435 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 TRPC5OSA6NMA1 111 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 FAM25AB3EWG3 89 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 FAM25CB3EWG5 89 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 FAM25GB3EWG6 89 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 HAT1O14929 419 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 VNN2O95498 520 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 GFAPP14136 432 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 CHRM3P20309 590 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 OR1E1P30953 314 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 OR1D2P34982 312 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 ACVRL1P37023 503 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 RPS27LQ71UM5 84 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 P2RY8Q86VZ1 359 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 PPHLN1Q8NEY8 458 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 TEKT2Q9UIF3 430 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 NLRC5Q86WI3 1866 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 LINC00854A0A1B0GVQ3 168 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 OR6C75A6NL08 312 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 PSMD3O43242 534 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 NTRK1P04629 796 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 ITGB6P18564 788 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 MAP2K4P45985 399 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 SERPINH1P50454 418 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 GPR17Q13304 367 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 MRPL58Q14197 206 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 SQLEQ14534 574 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 FUT11Q495W5 492 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 C6orf141Q5SZD1 244 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 ZNF438Q7Z4V0 828 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 LACC1Q8IV20 430 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 KDM1BQ8NB78 822 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 IL17RDQ8NFM7 739 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 TTPALQ9BTX7 342 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 KIFC1Q9BW19 673 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 DNMT3LQ9UJW3 386 aa13.75□□□□□ -0.21
LIG1-203ENST00000536218 WBP11Q9Y2W2 641 aaKnown RBP13.75□□□□□ -0.21
LIG1-203ENST00000536218 H0Y626 953 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 XPNPEP2O43895 674 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 C7P10643 843 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 FCGR1AP12314 374 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 WEE1P30291 646 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 SLC9A3P48764 834 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 YBX1P67809 324 aaKnown RBP13.74□□□□□ -0.21
LIG1-203ENST00000536218 RBM48Q5RL73 367 aaKnown RBP13.74□□□□□ -0.21
LIG1-203ENST00000536218 SPOUT1Q5T280 376 aaKnown RBP13.74□□□□□ -0.21
LIG1-203ENST00000536218 NXNL2Q5VZ03 156 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 KIAA1841Q6NSI8 718 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 SLAIN1Q8ND83 568 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 KCTD4Q8WVF5 259 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 PEX13Q92968 403 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 BTN2A3PQ96KV6 586 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 FBRSL1Q9HCM7 1045 aaKnown RBP13.74□□□□□ -0.21
LIG1-203ENST00000536218 A0A0X1KG70 313 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 PTTG1O95997 202 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 THRBP10828 461 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 RHOQP17081 205 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 RENBPP51606 427 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 C19orf57Q0VDD7 668 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 TBRG1Q3YBR2 411 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 VPS26BQ4G0F5 336 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ZNF470Q6ECI4 717 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 MSANTD2Q6P1R3 559 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ZYG11AQ6WRX3 759 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.74□□□□□ -0.218e-7■□□□□ 9.2
LIG1-203ENST00000536218 LDB1Q86U70 411 aaPredicted RBP13.74□□□□□ -0.21
LIG1-203ENST00000536218 NPAS4Q8IUM7 802 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ZHX1-C8orf76Q96EF9 292 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 C1orf74Q96LT6 269 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 SPON2Q9BUD6 331 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ZSCAN5AQ9BUG6 496 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 CYP4F12Q9HCS2 524 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ATP13A2Q9NQ11 1180 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ENTPD7Q9NQZ7 604 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 ANAPC2Q9UJX6 822 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 RWDD3Q9Y3V2 267 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 MTF2Q9Y483 593 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms