RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 KCNK6Q9Y257 313 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 PCYT1BQ9Y5K3 369 aaPredicted RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 DNMT3AQ9Y6K1 912 aaPredicted RBP9.93□□□□□ -0.82
VPS28-204ENST00000526054 SPTA1P02549 2419 aa9.93□□□□□ -0.82
VPS28-204ENST00000526054 HECTD1Q9ULT8 2610 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 TRBV23OR9-2A0A075B6M9 112 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 B4E171 279 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 TERTO14746 1132 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 CD3EAPO15446 510 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 RAD1O60671 282 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 AP2A2O94973 939 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 OGNP20774 298 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 PBLDP30039 288 aaPredicted RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 TSPAN7P41732 249 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 PRLHRP49683 370 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 DRG2P55039 364 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 THOC5Q13769 683 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 CLCA4Q14CN2 919 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 LONRF1Q17RB8 773 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 GLE1Q53GS7 698 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 SPANXN3Q5MJ09 141 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 SNAP47Q5SQN1 464 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 RNF187Q5TA31 235 aaPredicted RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 ANKS6Q68DC2 871 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 BORAQ6PGQ7 559 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 CENPUQ71F23 418 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 SDCCAG8Q86SQ7 713 aaPredicted RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 AMZ2Q86W34 360 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 ZNF547Q8IVP9 402 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 LMNTD2Q8IXW0 634 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 CACNA2D3Q8IZS8 1091 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 AGGF1Q8N302 714 aaeCLIP9.92□□□□□ -0.82
VPS28-204ENST00000526054 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS28-204ENST00000526054 NOA1Q8NC60 698 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 CALML6Q8TD86 181 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 TEFMQ96QE5 360 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 CARD6Q9BX69 1037 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 SLC12A9Q9BXP2 914 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 SLC25A18Q9H1K4 315 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 GEMIN8Q9NWZ8 242 aaKnown RBP9.92□□□□□ -0.82
VPS28-204ENST00000526054 OCIAD1Q9NX40 245 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 GRHL1Q9NZI5 618 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 IL17BQ9UHF5 180 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 CHMP2BQ9UQN3 213 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 VPS9D1Q9Y2B5 631 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 DNAJC16Q9Y2G8 782 aa9.92□□□□□ -0.82
VPS28-204ENST00000526054 TLN1Q9Y490 2541 aaKnown RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 ZCWPW2A0A1B0GU75 182 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 MGAT4DA6NG13 374 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 OR5K4A6NMS3 321 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 ZNF891A8MT65 544 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 A8MU76 341 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 PDZK1P1A8MUH7 402 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 E7ESA3 106 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 EIF3HO15372 352 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS28-204ENST00000526054 SUV39H1O43463 412 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 SNX2O60749 519 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 NDUFS3O75489 264 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 BANF1O75531 89 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 POP7O75817 140 aaKnown RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 EML2O95834 649 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 FTH1P02794 183 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 GSTM1P09488 218 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 OR56A5P0C7T3 313 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 IDSP22304 550 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 ARNTP27540 789 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 ELK3P41970 407 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 MAPK9P45984 424 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 ARCN1P48444 511 aaKnown RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 EPHA4P54764 986 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 PLTPP55058 493 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 POLE2P56282 527 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 SLC7A5Q01650 507 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 GUCY2DQ02846 1103 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 GSTM4Q03013 218 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 DMPKQ09013 629 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 PDIA2Q13087 525 aaKnown RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 SEMA3AQ14563 771 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 CRYMQ14894 314 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 MSS51Q4VC12 460 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 NEPROQ6NW34 567 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 WDR74Q6RFH5 385 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 MICALCLQ6ZW33 695 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 C11orf96Q7Z7L8 435 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 SLC9B2Q86UD5 537 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 LRRC6Q86X45 466 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 BEND7Q8N7W2 519 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 BMPERQ8N8U9 685 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 AVL9Q8NBF6 648 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 GPR150Q8NGU9 434 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 HM13Q8TCT9 377 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 KIAA1143Q96AT1 154 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 SH3KBP1Q96B97 665 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 CFAP36Q96G28 342 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 LINC00615Q96LM1 132 aaPredicted RBP9.91□□□□□ -0.82
VPS28-204ENST00000526054 PWWP2AQ96N64 755 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 TCF12Q99081 682 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 CTRCQ99895 268 aa9.91□□□□□ -0.82
VPS28-204ENST00000526054 TRIM56Q9BRZ2 755 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms