RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ENO2P09104 434 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 ADH5P11766 374 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 SLC7A1P30825 629 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 PIK3CGP48736 1102 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 CDKL1Q00532 357 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 RFTN2Q52LD8 501 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 ZNF805Q5CZA5 627 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 CYP20A1Q6UW02 462 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 C12orf40Q86WS4 652 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 PPP3R2Q96LZ3 170 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 DUS2Q9NX74 493 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 DLGAP2Q9P1A6 1054 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 SCOCQ9UIL1 159 aa20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 POLR3HQ9Y535 204 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-208ENST00000492980 DPPA5A6NC42 116 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 ANKRD28O15084 1053 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 STAMBPO95630 424 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 LYNP07948 512 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 SRPRAP08240 638 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 MPC1LP0DKB6 136 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 GGT5P36269 586 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 PRKG2Q13237 762 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 BOP1Q14137 746 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 SPATS1Q496A3 300 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 PLEKHS1Q5SXH7 462 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 OR2T34Q8NGX1 318 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 OR2T3Q8NH03 318 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 ASB11Q8WXH4 323 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 ZUFSPQ96AP4 578 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 TRIM8Q9BZR9 551 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 VCXQ9H320 206 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 PARVBQ9HBI1 364 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 FARSBQ9NSD9 589 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 NFKBIL1Q9UBC1 381 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 KLQ9UEF7 1012 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 SGTAO43765 313 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 RB1P06400 928 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 EPORP19235 508 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 BNIP2Q12982 314 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 MED21Q13503 144 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 ZXDCQ2QGD7 858 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 HENMT1Q5T8I9 393 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 DPPA4Q7L190 304 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 RBM23Q86U06 439 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 TRAM1L1Q8N609 369 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 ZNF366Q8N895 744 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 OSCP1Q8WVF1 389 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 SLC32A1Q9H598 525 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 DKK3Q9UBP4 350 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 CHD7Q9P2D1 2997 aa20.66■□□□□ 0.9
CCDC88B-208ENST00000492980 FADS2P1A8MWK0 482 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 CFAP99D6REC4 459 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 SLC28A1O00337 649 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 HOXC11O43248 304 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 RGS14O43566 566 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 ASLP04424 464 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 NFKBIAP25963 317 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 POM121L1PQ3SYA9 428 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 HABP4Q5JVS0 413 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 TTC23LQ6PF05 361 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 TRIM46Q7Z4K8 759 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 C7orf61Q8IZ16 206 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 DDHD1Q8NEL9 900 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 DNAJB14Q8TBM8 379 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 WFIKKN2Q8TEU8 576 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 MIEF2Q96C03 454 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 LRIG1Q96JA1 1093 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 RIOK2Q9BVS4 552 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 SLAMF8Q9P0V8 285 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 DYTNA2CJ06 578 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 C16orf96A6NNT2 1141 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 ZNF839A8K0R7 811 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 MANBAO00462 879 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 EN2P19622 333 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 GRIA3P42263 894 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 RPL38P63173 70 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 FOLH1Q04609 750 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 RABL3Q5HYI8 236 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 IRAK1BP1Q5VVH5 260 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 FBXL19Q6PCT2 694 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 KIAA2013Q8IYS2 634 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 TCAIMQ8N3R3 496 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 SKA2Q8WVK7 121 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 LRTOMTQ8WZ04 291 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 USP7Q93009 1102 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 UHRF1Q96T88 793 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 SLC29A3Q9BZD2 475 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 PIDD1Q9HB75 910 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 RAD18Q9NS91 495 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 DPP7Q9UHL4 492 aa20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 ZNF490Q9ULM2 529 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-208ENST00000492980 GRXCR2A6NFK2 248 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 ULK1O75385 1050 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 RSL1D1O76021 490 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 AP2A2O94973 939 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 SLC2A4P14672 509 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 XPAP23025 273 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 JAK1P23458 1154 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 MMP12P39900 470 aa20.64■□□□□ 0.89
CCDC88B-208ENST00000492980 VIPR2P41587 438 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms