RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 KRTCAP3Q53RY4 240 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 MFSD4BQ5TF39 518 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 ERC1Q8IUD2 1116 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 LMNTD2Q8IXW0 634 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 HACE1Q8IYU2 909 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 SNRNP27Q8WVK2 155 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 PRAC1Q96KF2 57 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 EGLN2Q96KS0 407 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 GAD1Q99259 594 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 PSD2Q9BQI7 771 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 ECHDC1Q9NTX5 307 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 TCP11L1Q9NUJ3 509 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 KLHL9Q9P2J3 617 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 COPG2Q9UBF2 871 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 DNAJB4Q9UDY4 337 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 OR14J1Q9UGF5 321 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 SEC63Q9UGP8 760 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 KLK13Q9UKR3 277 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 CMAHPQ9Y471 501 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 RPS6KL1Q9Y6S9 549 aa2.85□□□□□ -1.95
CCDC88A-212ENST00000474059 A0A1W2PR77 199 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 C15orf62A8K5M9 175 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 P4HA2O15460 535 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PLOD3O60568 738 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 GPC4O75487 556 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 HIST1H2ABP04908 130 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 ICAM1P05362 532 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 ADRB2P07550 413 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PLA2G4BP0C869 781 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 ACTN1P12814 892 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 TYMPP19971 482 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 HIST1H2ADP20671 130 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 SAT1P21673 171 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 KRT20P35900 424 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 NNMTP40261 264 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 BMXP51813 675 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PPARDQ03181 441 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 CDC16Q13042 620 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 RIGQ13278 110 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PCLAFQ15004 111 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PNLIPRP3Q17RR3 467 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 CTU2Q2VPK5 515 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 ZNF805Q5CZA5 627 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 TMCO3Q6UWJ1 677 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 Q75L30 129 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 HIST3H2AQ7L7L0 130 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 SDCCAG8Q86SQ7 713 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 KBTBD6Q86V97 674 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 LONP2Q86WA8 852 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 LINC00346Q8IVM7 164 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 TRPC4APQ8TEL6 797 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 APBB2Q92870 758 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 LRRC59Q96AG4 307 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PHF21AQ96BD5 680 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 SLC22A18Q96BI1 424 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 CCDC34Q96HJ3 373 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 SLF1Q9BQI6 1058 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 HRH4Q9H3N8 390 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PIGMQ9H3S5 423 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 ZBTB20Q9HC78 741 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PAG1Q9NWQ8 432 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 WSB2Q9NYS7 404 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 FBXW11Q9UKB1 542 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 KCNJ14Q9UNX9 436 aa2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 EXOGQ9Y2C4 368 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 PTRH2Q9Y3E5 179 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-212ENST00000474059 OR5K3A6NET4 321 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 A8MV72 311 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 MAGEB17A8MXT2 336 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 FAM90A26D6RGX4 464 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 H0YIN7 160 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 M0QZ24 198 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 ADAMDEC1O15204 470 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 OGG1O15527 345 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 PAPSS1O43252 624 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 ADAM20O43506 726 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 SYNCRIPO60506 623 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 MITFO75030 526 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 KCNK5O95279 499 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 DNTTP04053 509 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 EDN1P05305 212 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 ACADSP16219 412 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 GNAZP19086 355 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 IL11P20809 199 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 UBA1P22314 1058 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 MSH2P43246 934 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 SUOXP51687 545 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 GPR143P51810 404 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 LRMPQ12912 555 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 DLG2Q15700 870 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 NTRK2Q16620 822 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 UGP2Q16851 508 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 BMP2KLQ5H9B9 411 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 RARS2Q5T160 578 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 NSUN5P2Q63ZY6 315 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 TRIM65Q6PJ69 517 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 SH2D5Q6ZV89 423 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 PRPF39Q86UA1 669 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 AACSQ86V21 672 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 SCYL3Q8IZE3 742 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms