RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DUSP16Q9BY84 665 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 RNF38Q9H0F5 515 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 POPDC3Q9HBV1 291 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 MOSPD1Q9UJG1 213 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PP2D1A8MPX8 630 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PHYHO14832 338 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ZNF182P17025 639 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 MMP8P22894 467 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PTPN9P43378 593 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 DALRD3Q5D0E6 543 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 FAM35AQ86V20 835 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ZSCAN18Q8TBC5 510 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 SETD7Q8WTS6 366 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 ARL11Q969Q4 196 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CIB1Q99828 191 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SMURF1Q9HCE7 757 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 RCBTB2O95199 551 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PDYNP01213 254 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TPH1P17752 444 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 GRK5P34947 590 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 ALDH7A1P49419 539 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 RGS8P57771 180 aaPredicted RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 NOMO3P69849 1222 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 NOMO1Q15155 1222 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 C2orf69Q8N8R5 385 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 SNX33Q8WV41 574 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 TAS2R3Q9NYW6 316 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 IL20Q9NYY1 176 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 EIF3KQ9UBQ5 218 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 TBX1O43435 398 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 CD247P20963 164 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 MAGEA6P43360 314 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 HLCSP50747 726 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 PRAMEF17Q5VTA0 474 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 KCTD12Q96CX2 325 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 AGAP2Q99490 1192 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 HEPHQ9BQS7 1158 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 YIPF4Q9BSR8 244 aa7.09□□□□□ -1.27
VPS53-204ENST00000437048 LYARQ9NX58 379 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 C14orf166Q9Y224 244 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 REXO2Q9Y3B8 237 aaKnown RBP7.09□□□□□ -1.27
VPS53-204ENST00000437048 PRR5-ARHGAP8B1AHC4 643 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 OR1I1O60431 355 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 CD36P16671 472 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 ZNF37AP17032 561 aaPredicted RBP7.09□□□□□ -1.28
VPS53-204ENST00000437048 FSHRP23945 695 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 ARHGAP8P85298 464 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 ABCA11PQ4W5N1 156 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 FBXO33Q7Z6M2 555 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 KIAA0895Q8NCT3 520 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 CCDC54Q8NEL0 328 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 OR8J3Q8NGG0 315 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 KCNMB3Q9NPA1 279 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 KIF25Q9UIL4 384 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 MGAT4BQ9UQ53 548 aa7.09□□□□□ -1.28
VPS53-204ENST00000437048 CHMP24386 653 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FMO4P31512 558 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 BLOC1S1P78537 153 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FMO1Q01740 532 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 AIMP2Q13155 320 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 SLC25A52Q3SY17 297 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 UNC5DQ6UXZ4 953 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TIFABQ6ZNK6 161 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 DDX53Q86TM3 631 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 ZNF615Q8N8J6 731 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ELP5Q8TE02 316 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 STYXQ8WUJ0 223 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FAM84BQ96KN1 310 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 ZNF471Q9BX82 626 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 GPN2Q9H9Y4 310 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 XPNPEP1Q9NQW7 623 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 PHF24Q9UPV7 400 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 HSPB11Q9Y547 144 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ASTN1O14525 1302 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CCRL2O00421 344 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 XPNPEP2O43895 674 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 LINGO3P0C6S8 592 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 IL4RP24394 825 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 BUD31P41223 144 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 SCNN1GP51170 649 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 LSAMPQ13449 338 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SETMARQ53H47 684 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 TARS2Q9BW92 718 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 MRM3Q9HC36 420 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 NME7Q9Y5B8 376 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 THOP1P52888 689 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SNAPC2Q13487 334 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 LRRC55Q6ZSA7 311 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 HJURPQ8NCD3 748 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 POC1BQ8TC44 478 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ISOC1Q96CN7 298 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ART5Q96L15 291 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FAM120CQ9NX05 1096 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 ARHGEF28Q8N1W1 1705 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 OR7A10O76100 309 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TRUB2O95900 331 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 CERS1P27544 350 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 VAMP2P63027 116 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 JPH3Q8WXH2 748 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 RERGQ96A58 199 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms