RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PAMR1Q6UXH9 720 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TBC1D17Q9HA65 648 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 MKKSQ9NPJ1 570 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TRBV23OR9-2A0A075B6M9 112 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 MATN3O15232 486 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 AHCYP23526 432 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SEPHS1P49903 392 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GBX2P52951 348 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 CHIT1Q13231 466 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 IDNKQ5T6J7 187 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 INO80EQ8NBZ0 244 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TMCO6Q96DC7 493 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 INTS10Q9NVR2 710 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 C4orf46Q504U0 113 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC22A15Q8IZD6 547 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TMEM145Q8NBT3 493 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 C8orf48Q96LL4 319 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 KXD1Q9BQD3 176 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 C14orf105Q9NVL8 296 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 DNAAF2Q9NVR5 837 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF726A6NNF4 738 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GOT2P00505 430 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 FSHRP23945 695 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 UGT1A3P35503 534 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 PGDP52209 483 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 DDR1Q08345 913 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC1A5Q15758 541 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GRPEL2Q8TAA5 225 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 PWWP2AQ96N64 755 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 UNC93B1Q9H1C4 597 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 B3GAT2Q9NPZ5 323 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TRNAU1APQ9NX07 287 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 PLK2Q9NYY3 685 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 NPHS1O60500 1241 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 PIAS1O75925 651 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 PTPN2P17706 415 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 GAD2Q05329 585 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 CLEC6AQ6EIG7 209 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC8B1Q6J4K2 584 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 RASGEF1CQ8N431 466 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 ERCC6L2Q5T890 1561 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 CPN2P22792 545 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 TIE1P35590 1138 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 RBM34P42696 430 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MPP1Q00013 466 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 KLHL26Q53HC5 615 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 EGFLAMQ63HQ2 1017 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 JOSD2Q8TAC2 188 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 LPGAT1Q92604 370 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 HMCESQ96FZ2 354 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 NOX1Q9Y5S8 564 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 CILPO75339 1184 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MPIP34949 423 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MSX2P35548 267 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 PBX3P40426 434 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MAP3K8P41279 467 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MAZP56270 477 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 TMEM220Q6QAJ8 160 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 IRF2BP2Q7Z5L9 587 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 NUSAP1Q9BXS6 441 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 RUVBL1Q9Y265 456 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 PCDHGA11Q9Y5H2 935 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 CXCR6O00574 342 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 KAT7O95251 611 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 HSD11B1P28845 292 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 WASP42768 502 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 NSG1P42857 185 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 PTGER3P43115 390 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 LIMK2P53671 638 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 DSC2Q02487 901 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 INAVAQ3KP66 663 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 AKAP1Q92667 903 aaKnown RBP eCLIP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 KAT2AQ92830 837 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 DEFB118Q96PH6 123 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MAF1Q9H063 256 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 TESMINQ9Y4I5 508 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 GRIN2DO15399 1336 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 C5orf51A6NDU8 294 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 KLRC4O43908 158 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 TCEA1P23193 301 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 MECP2P51608 486 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 FOXM1Q08050 763 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM189A2Q15884 450 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 UGCGQ16739 394 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 GXYLT1Q4G148 440 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 P4HA3Q7Z4N8 544 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 ZBTB46Q86UZ6 589 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 SPERTQ8NA61 448 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 CPNE2Q96FN4 548 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 PDE10AQ9Y233 779 aa12.6□□□□□ -0.39
CCDC88C-204ENST00000389857 DAPL1A0PJW8 107 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ILVBLA1L0T0 632 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 IQCF5A8MTL0 148 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 TMEM150CB9EJG8 249 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 H0YJX3 145 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 EPHB6O15197 1021 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 AGR2O95994 175 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CLCN4P51793 760 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 VITQ6UXI7 678 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 OR51V1Q9H2C8 321 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms