RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 SNX7Q9UNH6 387 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 PAPPAQ13219 1627 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 GPC1P35052 558 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 IRF8Q02556 426 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 MTA1Q13330 715 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 PTPRCAPQ14761 206 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 CYP20A1Q6UW02 462 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 GPR156Q8NFN8 814 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 NELL1Q92832 810 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 LGALS12Q96DT0 336 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 AURKBQ96GD4 344 aaPredicted RBP14.04□□□□□ -0.16
RTF1-201ENST00000389629 TMEM209Q96SK2 561 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 MIEF1Q9NQG6 463 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 ADARB2Q9NS39 739 aaKnown RBP14.04□□□□□ -0.16
RTF1-201ENST00000389629 SMPD4Q9NXE4 827 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 ENOPH1Q9UHY7 261 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 CPQQ9Y646 472 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 CSF2P04141 144 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 HMGCS1Q01581 520 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 DUS1LQ6P1R4 473 aaKnown RBP14.04□□□□□ -0.16
RTF1-201ENST00000389629 SH2D5Q6ZV89 423 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 CYP2U1Q7Z449 544 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 CARM1Q86X55 608 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 TMEM102Q8N9M5 508 aaPredicted RBP14.04□□□□□ -0.16
RTF1-201ENST00000389629 PRDM5Q9NQX1 630 aaPredicted RBP14.04□□□□□ -0.16
RTF1-201ENST00000389629 UCKL1Q9NWZ5 548 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 MTMR10Q9NXD2 777 aa14.04□□□□□ -0.16
RTF1-201ENST00000389629 TLR5O60602 858 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 USP2O75604 605 aaPredicted RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 CTPS1P17812 591 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 CRYBB1P53674 252 aaPredicted RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 OR4D2P58180 307 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 TUBB3Q13509 450 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 GTPBP3Q969Y2 492 aaKnown RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 TEPSINQ96N21 525 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 H0YAE9 185 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 TNFRSF11BO00300 401 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 CHRNA1P02708 482 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 C9P02748 559 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 PBLDP30039 288 aaPredicted RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 FEN1P39748 380 aaKnown RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 GPR15P49685 360 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 CNTN1Q12860 1018 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 PAQR5Q9NXK6 330 aaPredicted RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 IGKV6D-21A0A0A0MT36 114 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 ECI2O75521 394 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 ANXA5P08758 320 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 DNAJB1P25685 340 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 TIE1P35590 1138 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 IL18Q14116 193 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 DOK6Q6PKX4 331 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 SH3YL1Q96HL8 342 aaPredicted RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 KCNC2Q96PR1 638 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 PHOX2BQ99453 314 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 ADAM2Q99965 735 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 MRPL39Q9NYK5 338 aaKnown RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 MAGED1Q9Y5V3 778 aaPredicted RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 PRR23AA6NEV1 266 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 PLK4O00444 970 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 CASKO14936 926 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 SSNA1O43805 119 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 OR10H3O60404 316 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 MATN1P21941 496 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 DGKEP52429 567 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 PFKPQ01813 784 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 ARHGAP1Q07960 439 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 B3GALT6Q96L58 329 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 TRNT1Q96Q11 434 aaKnown RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 NFKBIZQ9BYH8 718 aa14.03□□□□□ -0.16
RTF1-201ENST00000389629 TFB2MQ9H5Q4 396 aaKnown RBP14.03□□□□□ -0.16
RTF1-201ENST00000389629 SMIM35A0A1B0GVV1 85 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 A0A1B0GW55 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 ZSCAN5BA6NJL1 495 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 CDC7O00311 574 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 AP1G1O43747 822 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4L2P0CJ85 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4L3P0CJ86 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4L4P0CJ87 422 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4L5P0CJ88 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4L6P0CJ89 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4L7P0CJ90 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 CD68P34810 354 aaPredicted RBP14.02□□□□□ -0.16
RTF1-201ENST00000389629 RNASE12Q5GAN4 147 aaKnown RBP14.02□□□□□ -0.16
RTF1-201ENST00000389629 CILP2Q8IUL8 1156 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 KCTD13Q8WZ19 329 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 ITPAQ9BY32 194 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 DUX4Q9UBX2 424 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 SNX6Q9UNH7 406 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 TRPV2Q9Y5S1 764 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 J3KR12 359 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 NDST3O95803 873 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 G6PDP11413 515 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 RHOQP17081 205 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 PURAQ00577 322 aaKnown RBP14.02□□□□□ -0.16
RTF1-201ENST00000389629 TBRG1Q3YBR2 411 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 FAM171A1Q5VUB5 890 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 PHACTR4Q8IZ21 702 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 PSD4Q8NDX1 1056 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 MYRFLQ96LU7 910 aa14.02□□□□□ -0.16
RTF1-201ENST00000389629 SMOQ99835 787 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms