RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 TMEM17Q86X19 198 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 TTC29Q8NA56 475 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 OR1M1Q8NGA1 313 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 ASB15Q8WXK1 588 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 PPP3R2Q96LZ3 170 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 TREX2Q9BQ50 279 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 ZNF768Q9H5H4 540 aaKnown RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 TRHDEQ9UKU6 1024 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 PPIEQ9UNP9 301 aaKnown RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 DLGAP4Q9Y2H0 992 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 SPDYE2BA6NHP3 402 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 INMT-MINDY4F8WBC2 141 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 CTDSP2O14595 271 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 STX16O14662 325 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 NIPSNAP2O75323 286 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 CCNB2O95067 398 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 SPDYE6P0CI01 402 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 STOMP27105 288 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 HTR1BP28222 390 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 GCAP28676 217 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 DCDC1P59894 354 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 ILF3Q12906 894 aaKnown RBP eCLIP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 USP10Q14694 798 aaKnown RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 PGM5Q15124 567 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 NHSL2Q5HYW2 709 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 AHSA2Q719I0 299 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 IL17RDQ8NFM7 739 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 OR6C4Q8NGE1 309 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 ELMO3Q96BJ8 720 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 ZNF669Q96BR6 464 aaPredicted RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 TOE1Q96GM8 510 aaKnown RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 SLC45A3Q96JT2 553 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 COQ10AQ96MF6 247 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 NECTIN4Q96NY8 510 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 MAGEB5Q9BZ81 275 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 ZCCHC2Q9C0B9 1178 aaKnown RBP11.6□□□□□ -0.55
NPHP4-202ENST00000378161 SIX2Q9NPC8 291 aa11.6□□□□□ -0.55
NPHP4-202ENST00000378161 F8VP50 259 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 APOC4-APOC2K7ER74 178 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 FAM155BO75949 473 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 PRAMEF1O95521 474 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 APOC2P02655 101 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 CYP2C8P10632 490 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 NCF4Q15080 339 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 SLC9B1Q4ZJI4 515 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ZNF557Q8N988 423 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 AVL9Q8NBF6 648 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 TMEM161BQ8NDZ6 487 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 RNF139Q8WU17 664 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 SLC13A3Q8WWT9 602 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 RADILQ96JH8 1075 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 SLITRK1Q96PX8 696 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 HOPXQ9BPY8 73 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 RBM4BQ9BQ04 359 aaKnown RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 RBM4Q9BWF3 364 aaKnown RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ITPAQ9BY32 194 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 GSDMCQ9BYG8 508 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ZNF436Q9C0F3 470 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 QRSL1Q9H0R6 528 aaKnown RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 OLA1Q9NTK5 396 aaKnown RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 PCDHGB1Q9Y5G3 927 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 C3orf70A6NLC5 250 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 FGFR1P11362 822 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 SOX10P56693 466 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 PTPN11Q06124 597 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 LRRC26Q2I0M4 334 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 CIR1Q86X95 450 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 CCDC71Q8IV32 467 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 CDYL2Q8N8U2 506 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 LPCAT1Q8NF37 534 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 OR6M1Q8NGM8 313 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 KREMEN1Q96MU8 473 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 IKZF4Q9H2S9 585 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ABCB9Q9NP78 766 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 SLAMF7Q9NQ25 335 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 MFHAS1Q9Y4C4 1052 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 PCDHB12Q9Y5F1 795 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ALG5Q9Y673 324 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 CIB4A0PJX0 185 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 TPP1O14773 563 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 B4GAT1O43505 415 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 AMHP03971 560 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 THEGLP0DJG4 465 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ATP12AP54707 1039 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 TPI1P60174 286 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ELP6Q0PNE2 266 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 TRAM2Q15035 370 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 TAF8Q7Z7C8 310 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 APOBEC3FQ8IUX4 373 aaKnown RBP11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ADGRG5Q8IZF4 528 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 SLC34A3Q8N130 599 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ZNF614Q8N883 585 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 OR52N1Q8NH53 320 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 EXT2Q93063 718 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 IL1RAPQ9NPH3 570 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 VPS28Q9UK41 221 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 RNF6Q9Y252 685 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 PLEKHA6Q9Y2H5 1048 aa11.59□□□□□ -0.55
NPHP4-202ENST00000378161 ASB14A6NK59 587 aa11.58□□□□□ -0.55
NPHP4-202ENST00000378161 ADAM12O43184 909 aa11.58□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms