RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CARD16Q5EG05 197 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SIRPB2Q5JXA9 342 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 AGAP9Q5VTM2 703 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 DENND2CQ68D51 928 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 NAPEPLDQ6IQ20 393 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 C22orf39Q6P5X5 142 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 CES3Q6UWW8 571 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PPP1R21Q6ZMI0 780 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 DPY19L3Q6ZPD9 716 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 TRMT10CQ7L0Y3 403 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 CAMK1DQ8IU85 385 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 UNC5BQ8IZJ1 945 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 BBS5Q8N3I7 341 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SLC25A41Q8N5S1 370 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ESX1Q8N693 406 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ZNF366Q8N895 744 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ZNF557Q8N988 423 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 TERB1Q8NA31 727 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SIMC1Q8NDZ2 872 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 OR2AP1Q8NGE2 309 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 OR2A12Q8NGT7 310 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PYROXD1Q8WU10 500 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 UBLCP1Q8WVY7 318 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 SLC35A4Q96G79 324 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 FEM1CQ96JP0 617 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ZIM3Q96PE6 472 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 TUBGCP5Q96RT8 1024 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ACOX2Q99424 681 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 EBNA1BP2Q99848 306 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 TDRD1Q9BXT4 1180 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 FRMD8Q9BZ67 464 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 ZDHHC4Q9NPG8 344 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 OBP2BQ9NPH6 170 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 RASSF1Q9NS23 344 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SLC25A13Q9UJS0 675 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 RAI2Q9Y5P3 530 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 COL4A2P08572 1712 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 KIAA1549LQ6ZVL6 1849 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ADAMTS20P59510 1910 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ATG2BQ96BY7 2078 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 BPTFQ12830 3046 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 A0A0U1RQS6 177 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PRAMEF25A6NGN4 478 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ANKRD36A6QL64 1941 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PIAS1O75925 651 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PCDH8O95206 1070 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PIGNO95427 931 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 POP4O95707 220 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 EPOP01588 193 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PRKCGP05129 697 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ATP5BP06576 529 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 CTSLP07711 333 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SRPRAP08240 638 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 PIRTP0C851 137 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PRKCHP24723 683 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SLC8A1P32418 973 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 EIF2DP41214 584 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 CCNHP51946 323 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 AP1S1P61966 158 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 CDH17Q12864 832 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 GALNT3Q14435 633 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ZNF234Q14588 700 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 DNAJC21Q5F1R6 531 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 SPDYCQ5MJ68 293 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 CFAP58Q5T655 872 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 STEAP4Q687X5 459 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 MILR1Q7Z6M3 343 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 LINC00523Q86TU6 105 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 NLGN4XQ8N0W4 816 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 RYBPQ8N488 228 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 PCDH20Q8N6Y1 951 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 DNAAF3Q8N9W5 541 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 TP53I13Q8NBR0 393 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 MAFAQ8NHW3 353 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 CSGALNACT1Q8TDX6 532 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PIH1D2Q8WWB5 315 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 CFAP36Q96G28 342 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 ZNF778Q96MU6 729 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PPP1R2P1Q96PQ5 205 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 BARD1Q99728 777 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 P2RY13Q9BPV8 354 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 CPEB1Q9BZB8 566 aaKnown RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 TMEM245Q9H330 911 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 TRPV5Q9NQA5 729 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 CHRAC1Q9NRG0 131 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 SMYD2Q9NRG4 433 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 HEBP1Q9NRV9 189 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 BFARQ9NZS9 450 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 THAP10Q9P2Z0 257 aaPredicted RBP3.54□□□□□ -1.84
MCF2-202ENST00000370573 MAD1L1Q9Y6D9 718 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 PMF1-BGLAPU3KQ54 211 aa3.54□□□□□ -1.84
MCF2-202ENST00000370573 MYLKQ15746 1914 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 MUC22E2RYF6 1773 aaPredicted RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 ZCWPW2A0A1B0GU75 182 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 UBA6A0AVT1 1052 aaPredicted RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 CCDC78A2IDD5 438 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 FAM234BA2RU67 622 aa3.53□□□□□ -1.84
MCF2-202ENST00000370573 CXorf49A8MYA2 514 aaPredicted RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.53□□□□□ -1.84
MCF2-202ENST00000370573 AREL1O15033 823 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms