RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TSPAN14Q8NG11 270 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 ASIC4Q96FT7 647 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 CGREF1Q99674 301 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 NTMT1Q9BV86 223 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 RBM38Q9H0Z9 239 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 PNPLA3Q9NST1 481 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 ZDHHC3Q9NYG2 299 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 OAZ3Q9UMX2 235 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 HS3ST2Q9Y278 367 aa20.43■□□□□ 0.86
CCDC88B-203ENST00000359902 LOC730098B7Z3J9 87 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 H3BNH8 94 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 RFC2P35250 354 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 B4GALNT1Q00973 533 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 PWP1Q13610 501 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 PLA2G4EQ3MJ16 856 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 ATP13A5Q4VNC0 1218 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 RNF165Q6ZSG1 346 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 TRIM46Q7Z4K8 759 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 TBC1D21Q8IYX1 336 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 ZBP1Q9H171 429 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 ABCG8Q9H221 673 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 KCTD5Q9NXV2 234 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 KLQ9UEF7 1012 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 PCDHB3Q9Y5E6 796 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 SLC28A1O00337 649 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 ULK1O75385 1050 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 CBSLP0DN79 551 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 LHCGRP22888 699 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 CBSP35520 551 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 LTBP2Q14767 1821 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 ADRM1Q16186 407 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 C22orf39Q6P5X5 142 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 LILRA6Q6PI73 481 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 USP45Q70EL2 814 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 ZFP28Q8NHY6 868 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 NMD3Q96D46 503 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 SMOXQ9NWM0 555 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 NEUROG3Q9Y4Z2 214 aa20.42■□□□□ 0.86
CCDC88B-203ENST00000359902 RNF103-CHMP3A0A140T963 221 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 CXorf51AA0A1B0GTR3 108 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 EBLN1P0CF75 366 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 EPB42P16452 691 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 MTPNP58546 118 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 WDR5P61964 334 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 HMGCS1Q01581 520 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 LSAMPQ13449 338 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 ARHGEF7Q14155 803 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 PTGR1Q14914 329 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 SMU1Q2TAY7 513 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 GLYATQ6IB77 296 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 MCCC1Q96RQ3 725 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 COPS8Q99627 209 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 CAAP1Q9H8G2 361 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 TRPS1Q9UHF7 1281 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 ZNF490Q9ULM2 529 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 EIF3LQ9Y262 564 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 MYRFQ9Y2G1 1151 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 STK16O75716 305 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 FGF18O76093 207 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 WDR47O94967 919 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 RASAL1O95294 804 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 CCR7P32248 378 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 PPM1AP35813 382 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 CREMQ03060 361 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 SGO1Q5FBB7 561 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 TMTC4Q5T4D3 741 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 FAM47BQ8NA70 645 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 KLHL42Q9P2K6 505 aa20.41■□□□□ 0.86
CCDC88B-203ENST00000359902 MANBAO00462 879 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 C8AP07357 584 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 GNAO1P09471 354 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 CTSAP10619 480 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 GNPDA1P46926 289 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 PLIN5Q00G26 463 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 C1orf53Q5VUE5 145 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 ASTLQ6HA08 431 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 SEPHS2Q99611 448 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 CORO1BQ9BR76 489 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 CPEB1Q9BZB8 566 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 CCL26Q9Y258 94 aa20.4■□□□□ 0.86
CCDC88B-203ENST00000359902 MERTKQ12866 999 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 MAD2L1Q13257 205 aaPredicted RBP20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 DPY19L3Q6ZPD9 716 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 RGL4Q8IZJ4 473 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 DTWD1Q8N5C7 304 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 RMND5BQ96G75 393 aaPredicted RBP20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 NSMCE2Q96MF7 247 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 YME1L1Q96TA2 773 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 HAUS8Q9BT25 410 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 ADI1Q9BV57 179 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 ZDHHC6Q9H6R6 413 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 VCX3AQ9NNX9 186 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 MAGEL2Q9UJ55 1249 aa20.39■□□□□ 0.86
CCDC88B-203ENST00000359902 IGLV3-16A0A075B6K0 115 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 CARNS1A5YM72 827 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 ANXA5P08758 320 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 EPORP19235 508 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 ITGB8P26012 769 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 RPIAP49247 311 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 AP1ARQ63HQ0 302 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms