RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 GRIN2CQ14957 1233 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 TMEM259Q4ZIN3 620 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 CARD16Q5EG05 197 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 C6orf136Q5SQH8 315 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 KANK2Q63ZY3 851 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 TMEM215Q68D42 235 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 SBSNQ6UWP8 590 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 UBE2R2Q712K3 238 aaPredicted RBP13.64□□□□□ -0.23
TRIM4-201ENST00000349062 MAP10Q9P2G4 905 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 USP34Q70CQ2 3546 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 NME4O00746 187 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 WDR47O94967 919 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 WISP3O95389 354 aaPredicted RBP13.64□□□□□ -0.23
TRIM4-201ENST00000349062 SMIM18P0DKX4 95 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 PTPN2P17706 415 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 NFKBIAP25963 317 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 DCTN2Q13561 401 aaKnown RBP13.64□□□□□ -0.23
TRIM4-201ENST00000349062 DOK6Q6PKX4 331 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 ADAMTSL2Q86TH1 951 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 SFRP1Q8N474 314 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 KRTCAP2Q8N6L1 136 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 NCSTNQ92542 709 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 THUMPD3Q9BV44 507 aaKnown RBP13.64□□□□□ -0.23
TRIM4-201ENST00000349062 NDUFA13Q9P0J0 144 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.64□□□□□ -0.23
TRIM4-201ENST00000349062 ZNF490Q9ULM2 529 aaPredicted RBP13.64□□□□□ -0.23
TRIM4-201ENST00000349062 ANAPC1Q9H1A4 1944 aa13.64□□□□□ -0.23
TRIM4-201ENST00000349062 TMEM202A6NGA9 273 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 MLYCDO95822 493 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 UROSP10746 265 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 CCR7P32248 378 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 PSMD7P51665 324 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 CCR3P51677 355 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 SH3BGRP55822 239 aaPredicted RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 MYBPC1Q00872 1141 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 PLOD1Q02809 727 aaPredicted RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 TBCELQ5QJ74 424 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 GPRC6AQ5T6X5 926 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 LPCAT2Q7L5N7 544 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 HSD11B1LQ7Z5J1 315 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 MRPL43Q8N983 215 aaKnown RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 EBPLQ9BY08 206 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 SPHK2Q9NRA0 654 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 VCANP13611 3396 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 RNF103-CHMP3A0A140T963 221 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 BOLA2-SMG1P6H3BVE0 249 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 RPS17P08708 135 aaKnown RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 HIST1H2AGP0C0S8 130 aaPredicted RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 HOXB8P17481 243 aaPredicted RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 HIST1H2ADP20671 130 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 ATP6V1B2P21281 511 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 SLC26A3P40879 764 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 CYP51A1Q16850 503 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 GRAMD4Q6IC98 578 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 PEX13Q92968 403 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 AURKBQ96GD4 344 aaPredicted RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 HIST1H2AHQ96KK5 128 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 HIST1H2AJQ99878 128 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 H2AFJQ9BTM1 129 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 IL23AQ9NPF7 189 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 EFEMP2O95967 443 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 MAGEA10P43363 369 aaPredicted RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 SUOXP51687 545 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 POLR2JP52435 117 aaKnown RBP13.63□□□□□ -0.23
TRIM4-201ENST00000349062 PGS1Q32NB8 556 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 GDPD4Q6W3E5 623 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 TPRG1Q6ZUI0 275 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 TMEM79Q9BSE2 394 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 RIC8BQ9NVN3 520 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 SLC22A14Q9Y267 594 aa13.63□□□□□ -0.23
TRIM4-201ENST00000349062 NOTCH4Q99466 2003 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 POP4O95707 220 aaKnown RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 SLC5A2P31639 672 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 GJA8P48165 433 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 Q6ZSR9 355 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 LRRC58Q96CX6 371 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 COQ10BQ9H8M1 238 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 PCDH12Q9NPG4 1184 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 TAPBPO15533 448 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 ULK1O75385 1050 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 CLIC3O95833 236 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 IL12AP29459 219 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 SLC6A11P48066 632 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 CASP9P55211 416 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 SYTL3Q4VX76 610 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 SAMD4BQ5PRF9 694 aaKnown RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 OTUD3Q5T2D3 398 aaPredicted RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 CHSY3Q70JA7 882 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 GET4Q7L5D6 327 aaPredicted RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 SLC15A3Q8IY34 581 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 SMG7Q92540 1137 aaKnown RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 LRRC3BQ96PB8 259 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 MTERF1Q99551 399 aaKnown RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 KCTD14Q9BQ13 255 aaPredicted RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 LRRC3Q9BY71 257 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 P2RY12Q9H244 342 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 OR7A17O14581 309 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 CA3P07451 260 aa13.62□□□□□ -0.23
TRIM4-201ENST00000349062 HSPA8P11142 646 aaKnown RBP13.62□□□□□ -0.23
TRIM4-201ENST00000349062 IDO1P14902 403 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms