RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 AP1M2Q9Y6Q5 423 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ANKRD12Q6UB98 2062 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ANKUB1A6NFN9 424 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 C5orf60A6NFR6 353 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 C2orf74A8MZ97 194 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 HACD1B0YJ81 288 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 BUD23O43709 281 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 ANXA9O76027 345 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 SRP72O76094 671 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 LCA5LO95447 670 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 POLBP06746 335 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 CDKN2BP42772 138 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 PRLHRP49683 370 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 MYBPC3Q14896 1274 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 KYNUQ16719 465 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 PTCHD3Q3KNS1 767 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 PLEKHN1Q494U1 663 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 ZNF787Q6DD87 383 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 CAVIN1Q6NZI2 390 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 FBXO38Q6PIJ6 1188 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 SARM1Q6SZW1 724 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 MFSD7Q6UXD7 560 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 B4GALNT4Q76KP1 1039 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 MRGPREQ86SM8 312 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 HOOK3Q86VS8 718 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 CFAP206Q8IYR0 622 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 P3H4Q92791 437 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 N4BP2L2Q92802 583 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 OXNAD1Q96HP4 312 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 PPM1MQ96MI6 270 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 FERMT1Q9BQL6 677 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 ILKAPQ9H0C8 392 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 TFB2MQ9H5Q4 396 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 ASB8Q9H765 288 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 MVB12BQ9H7P6 319 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 FAM8A1Q9UBU6 413 aa14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 GPN3Q9UHW5 284 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-201ENST00000301897 GOLGA6L19H0YKK7 550 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ZNF749O43361 778 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 AKR1B10O60218 316 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 CST8O60676 142 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 CLDN1O95832 211 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 GSTM1P09488 218 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ST6GAL1P15907 406 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 OTX2P32243 289 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 CA5AP35218 305 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 CD151P48509 253 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 GEMP55040 296 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 GSTM4Q03013 218 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 RPA4Q13156 261 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 TAZQ16635 292 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ASTE1Q2TB18 679 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 DAAM2Q86T65 1068 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 LUZP1Q86V48 1076 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 TICAM1Q8IUC6 712 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 SLC34A3Q8N130 599 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ZNF567Q8N184 647 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 GALNT16Q8N428 558 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ZADH2Q8N4Q0 377 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 OR8K1Q8NGG5 319 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 PROKR1Q8TCW9 393 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 COG1Q8WTW3 980 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 C19orf60Q96EN9 201 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 TCTN2Q96GX1 697 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 TRAPPC9Q96Q05 1148 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 FERD3LQ96RJ6 166 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ASF1BQ9NVP2 202 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 SAE1Q9UBE0 346 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 RSPH14Q9UHP6 348 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 CRLS1Q9UJA2 301 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 ARL5AQ9Y689 179 aa14.32□□□□□ -0.12
CCDC88B-201ENST00000301897 CCDC66A2RUB6 948 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 AGAP14A8MT82 685 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 BTN3A1O00481 513 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 PSTPIP1O43586 416 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 KRT86O43790 486 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 SPOPO43791 374 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 KLF7O75840 302 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 CRTAMO95727 393 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 ATP1B2P14415 290 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 ITGALP20701 1170 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 FOLR3P41439 243 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 LMAN1P49257 510 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 RAPSNQ13702 412 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 TRIM14Q14142 442 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 TFDP3Q5H9I0 405 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 DCAF10Q5QP82 559 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 FAM69BQ5VUD6 431 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 ZNF385CQ66K41 422 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 ITPRIPL1Q6GPH6 555 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 AMIGO1Q86WK6 493 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 CISD2Q8N5K1 135 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 OR4K2Q8NGD2 314 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 NACC2Q96BF6 587 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 RBM41Q96IZ5 413 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 QKIQ96PU8 341 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 DNAJC7Q99615 494 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 COPS8Q99627 209 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 AP1M1Q9BXS5 423 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms