RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ADI1Q9BV57 179 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 SLC46A2Q9BY10 475 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 RBM38Q9H0Z9 239 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 VAPAQ9P0L0 249 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 K7EPI3 171 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 SEC22BO75396 215 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 UGT2B4P06133 528 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 LAG3P18627 525 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 HTR1EP28566 365 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 CCR7P32248 378 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 MAPK8P45983 427 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 VEGFBP49765 207 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 MERTKQ12866 999 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 LSAMPQ13449 338 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 CPSF6Q16630 551 aaKnown RBP eCLIP17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 AASDHQ4L235 1098 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 LIX1Q8N485 282 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 DTWD1Q8N5C7 304 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 FBXL20Q96IG2 436 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 PPP3R2Q96LZ3 170 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 C9orf16Q9BUW7 83 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 CHID1Q9BWS9 393 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 RC3H2Q9HBD1 1191 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 SLCO3A1Q9UIG8 710 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 RGS14O43566 566 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 PCNAP12004 261 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 EPB42P16452 691 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 CSNK1DP48730 415 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 SNRPD1P62314 119 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 HSPA14Q0VDF9 509 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 ARHGEF6Q15052 776 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 IMPG1Q17R60 797 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 SPATS1Q496A3 300 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 GPR33Q49SQ1 333 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 LYPLAL1Q5VWZ2 237 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 ASTLQ6HA08 431 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 RGL4Q8IZJ4 473 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 GOLM1Q8NBJ4 401 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 MAGEE2Q8TD90 523 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 SLC22A17Q8WUG5 538 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 SCRN2Q96FV2 425 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 NSMCE2Q96MF7 247 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 HCFC1R1Q9NWW0 138 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 NEUROG3Q9Y4Z2 214 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 TRAV19A0A0A6YYK7 116 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 MTX2O75431 263 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 ACRP10323 421 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 JAK1P23458 1154 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 NFKBIAP25963 317 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 ITGB8P26012 769 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 NSG1P42857 185 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 RPIAP49247 311 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 SLC7A9P82251 487 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 KIAA0040Q15053 153 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 CRY1Q16526 586 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 TBPL2Q6SJ96 375 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 DPY19L3Q6ZPD9 716 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 EP400NLQ6ZTU2 488 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 TPRG1Q6ZUI0 275 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 OFCC1Q8IZS5 231 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 ZNF786Q8N393 782 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 CPXM2Q8N436 756 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 MFSD2AQ8NA29 543 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 MUC13Q9H3R2 512 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 SUV39H2Q9H5I1 410 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 VCX3AQ9NNX9 186 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 ARL15Q9NXU5 204 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 TBX21Q9UL17 535 aa17.98■□□□□ 0.47
SHKBP1-201ENST00000291842 CCL16O15467 120 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 STK16O75716 305 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 RASAL1O95294 804 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 CSF2RAP15509 400 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 MNX1P50219 401 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 PWP1Q13610 501 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 SPANXN4Q5MJ08 99 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 C22orf39Q6P5X5 142 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 SUSD1Q6UWL2 747 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 TMEM25Q86YD3 366 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 PACRGLQ8N7B6 248 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 CHST14Q8NCH0 376 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 SLC13A3Q8WWT9 602 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 PYCR2Q96C36 320 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 YME1L1Q96TA2 773 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 COPS8Q99627 209 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 EIF3LQ9Y262 564 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 ARNTLO00327 626 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 MANBAO00462 879 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 LILRB3O75022 631 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 NPPAP01160 153 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 C8AP07357 584 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 ZNF23P17027 643 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 NEK2P51955 445 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 PRMT2P55345 433 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 ZXDCQ2QGD7 858 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 TTLL9Q3SXZ7 439 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 OTUD3Q5T2D3 398 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 MPP7Q5T2T1 576 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 TMTC4Q5T4D3 741 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 USP45Q70EL2 814 aa17.97■□□□□ 0.47
SHKBP1-201ENST00000291842 SPRED1Q7Z699 444 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms