RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ST3GAL1Q11201 340 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 POTEHQ6S545 545 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 DENND2DQ9H6A0 471 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 MRM3Q9HC36 420 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 POLE4Q9NR33 117 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 DEC1Q9P2X7 70 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 VAMP1P23763 118 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 PBX3P40426 434 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 OR2T34Q8NGX1 318 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 OR2T3Q8NH03 318 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 TCTEX1D2Q8WW35 142 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 DDX1Q92499 740 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 NDRG1Q92597 394 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 MR1Q95460 341 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 KIAA1143Q96AT1 154 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.95□□□□□ -0.665e-7■■■□□ 15
MSH6-201ENST00000234420 SAMD4AQ9UPU9 718 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 BANF1O75531 89 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 UGT2B17O75795 530 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 KHDC1Q4VXA5 237 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 ABCA11PQ4W5N1 156 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 MSANTD2Q6P1R3 559 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 FSTL5Q8N475 847 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 COQ8BQ96D53 544 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 NUSAP1Q9BXS6 441 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 ELOVL4Q9GZR5 314 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 EIF5A2Q9GZV4 153 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 MEAF6Q9HAF1 191 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 C11orf16Q9NQ32 467 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 CARNS1A5YM72 827 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 LAMTOR5O43504 91 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 CRYZL1O95825 349 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 CDH15P55291 814 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 TIGD4Q8IY51 512 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 HEXDCQ8WVB3 486 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 ASB15Q8WXK1 588 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 SHDQ96IW2 340 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 TMEM246Q9BRR3 403 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 RC3H2Q9HBD1 1191 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 GAKO14976 1311 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 ZNF99A8MXY4 864 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 RPIAP49247 311 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 SPIN3Q5JUX0 258 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 GLYATQ6IB77 296 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 PTGR2Q8N8N7 351 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 ZYG11BQ9C0D3 744 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 CORO2BQ9UQ03 480 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 FAM86C2PA6NEL3 165 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 PDE2AO00408 941 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 MT-CYBP00156 380 aaPredicted RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 CD36P16671 472 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 DDX6P26196 483 aaKnown RBP eCLIP10.95□□□□□ -0.66
MSH6-201ENST00000234420 RBL1P28749 1068 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 PIK3CBP42338 1070 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 SMAD3P84022 425 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 MEA1Q16626 185 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 HHIPL2Q6UWX4 724 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 ZNF730Q6ZMV8 503 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 ZNF627Q7L945 461 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 CCDC107Q8WV48 283 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 BARD1Q99728 777 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 STRA6Q9BX79 667 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 SEC61A2Q9H9S3 476 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 MTRRQ9UBK8 725 aa10.95□□□□□ -0.66
MSH6-201ENST00000234420 MRTO4Q9UKD2 239 aaKnown RBP10.95□□□□□ -0.66
MSH6-201ENST00000234420 OAZ2O95190 189 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 IFNA2P01563 188 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ITPKAP23677 461 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 SLC15A1P46059 708 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 AVPR1BP47901 424 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 TAS2R50P59544 299 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 NADK2Q4G0N4 442 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 SMARCD3Q6STE5 483 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 TMED4Q7Z7H5 227 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ESX1Q8N693 406 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ASPNQ9BXN1 380 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 TBCCD1Q9NVR7 557 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ST14Q9Y5Y6 855 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 NRCAMQ92823 1304 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ICAM3P32942 547 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 PGM5Q15124 567 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ADNP2Q6IQ32 1131 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 FAIM2Q9BWQ8 316 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 AGPAT3Q9NRZ7 376 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 CACNG4Q9UBN1 327 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 FAM205AQ6ZU69 1335 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 TRAV6A0A075B6T7 132 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 OR2AG2A6NM03 316 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ANXA2P2A6NMY6 339 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ZNF705GA8MUZ8 300 aaPredicted RBP10.94□□□□□ -0.66
MSH6-201ENST00000234420 TXNL1O43396 289 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 ANXA2P07355 339 aaKnown RBP10.94□□□□□ -0.66
MSH6-201ENST00000234420 CCL5P13501 91 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 TYRP1P17643 537 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 FMO3P31513 532 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 SLC6A4P31645 630 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 CDKN2CP42773 168 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 VWA5B1Q5TIE3 1220 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 GALNT11Q8NCW6 608 aa10.94□□□□□ -0.66
MSH6-201ENST00000234420 MMABQ96EY8 250 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms