RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 LRRC49Q8IUZ0 686 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 RAVER1Q8IY67 606 aaKnown RBP13.89□□□□□ -0.19
LDB3-209ENST00000623056 CDYL2Q8N8U2 506 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 ARRDC4Q8NCT1 418 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 FAM83FQ8NEG4 500 aaPredicted RBP13.89□□□□□ -0.19
LDB3-209ENST00000623056 FUBP1Q96AE4 644 aaKnown RBP13.89□□□□□ -0.19
LDB3-209ENST00000623056 ESAMQ96AP7 390 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 KLHL5Q96PQ7 755 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 IKZF5Q9H5V7 419 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 ACOT13Q9NPJ3 140 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 OPTCQ9UBM4 332 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 UGT2A1Q9Y4X1 527 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 PAPPA2Q9BXP8 1791 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 NPEPPSL1A6NEC2 478 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 SAGE2PA6NJ88 616 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 STX16O14662 325 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 TPD52L2O43399 206 aaKnown RBP13.89□□□□□ -0.19
LDB3-209ENST00000623056 RHOBTB1O94844 696 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 TGFBR2P37173 567 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 FCGRTP55899 365 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 COPZ1P61923 177 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 VAC14Q08AM6 782 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 DESI1Q6ICB0 168 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 RNF19BQ6ZMZ0 732 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 SLC22A15Q8IZD6 547 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 KIAA1958Q8N8K9 716 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 RTL3Q8N8U3 475 aaKnown RBP13.89□□□□□ -0.19
LDB3-209ENST00000623056 SETD9Q8NE22 299 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 GPR150Q8NGU9 434 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 SENP8Q96LD8 212 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 TBCDQ9BTW9 1192 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 THUMPD3Q9BV44 507 aaKnown RBP13.89□□□□□ -0.19
LDB3-209ENST00000623056 C1QTNF3Q9BXJ4 246 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 DCSTAMPQ9H295 470 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 SYTL2Q9HCH5 934 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 SCN3BQ9NY72 215 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 FAM50BQ9Y247 325 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 ARL5AQ9Y689 179 aa13.89□□□□□ -0.19
LDB3-209ENST00000623056 PCNTO95613 3336 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 PABPN1LA6NDY0 278 aaKnown RBP13.88□□□□□ -0.19
LDB3-209ENST00000623056 EFCAB9A8MZ26 197 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 H0Y626 953 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 TAF4O00268 1085 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 CXCR6O00574 342 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 ANKRD28O15084 1053 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 RAD51BO15315 384 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 IRAK2O43187 625 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 TRIM16O95361 564 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 ATXN1LP0C7T5 689 aaKnown RBP13.88□□□□□ -0.19
LDB3-209ENST00000623056 PRSS56P0CW18 603 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 CYP4B1P13584 511 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 CD36P16671 472 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 IGFBP5P24593 272 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 SLC10A7Q0GE19 358 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 FADDQ13158 208 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 EIF4EBP2Q13542 120 aaPredicted RBP13.88□□□□□ -0.19
LDB3-209ENST00000623056 SIM2Q14190 667 aaPredicted RBP13.88□□□□□ -0.19
LDB3-209ENST00000623056 GBX1Q14549 363 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 ZNF404Q494X3 552 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 SETMARQ53H47 684 aaPredicted RBP13.88□□□□□ -0.19
LDB3-209ENST00000623056 DPP9Q86TI2 863 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 HIPK1Q86Z02 1210 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 OR56A4Q8NGH8 313 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 TP53INP1Q96A56 240 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 SMARCD1Q96GM5 515 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 CDK15Q96Q40 435 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 GAD1Q99259 594 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 MIR1-1HGQ9H1L0 117 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 MMP27Q9H306 513 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 RIBC2Q9H4K1 309 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 IL37Q9NZH6 218 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 UXTQ9UBK9 157 aaPredicted RBP13.88□□□□□ -0.19
LDB3-209ENST00000623056 ASB1Q9Y576 335 aa13.88□□□□□ -0.19
LDB3-209ENST00000623056 AGAP5A6NIR3 686 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 J3KR12 359 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 RGS10O43665 173 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 PTTG1O95997 202 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 HOXD8P13378 290 aaPredicted RBP13.87□□□□□ -0.19
LDB3-209ENST00000623056 BMP1P13497 986 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 DARSP14868 501 aaKnown RBP13.87□□□□□ -0.19
LDB3-209ENST00000623056 MAGP20916 626 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 HTR7P34969 479 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 RENBPP51606 427 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 ACVR1Q04771 509 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 RAD51Q06609 339 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 CYP4F3Q08477 520 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 CES5AQ6NT32 575 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 TAPT1Q6NXT6 567 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 TUBA3EQ6PEY2 450 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 USP43Q70EL4 1123 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 DET1Q7L5Y6 550 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 TAS2R42Q7RTR8 314 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 C14orf80Q86SX3 495 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 CHPFQ8IZ52 775 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 ELMOD1Q8N336 334 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 ZNF540Q8NDQ6 660 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 HBEGFQ99075 208 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 EMILIN2Q9BXX0 1053 aa13.87□□□□□ -0.19
LDB3-209ENST00000623056 AGO3Q9H9G7 860 aaKnown RBP13.87□□□□□ -0.19
LDB3-209ENST00000623056 CATSPERZQ9NTU4 200 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms