RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ZNF687Q8N1G0 1237 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 PDPRQ8NCN5 879 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 MYOCQ99972 504 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 C1QTNF3Q9BXJ4 246 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 NMUR2Q9GZQ4 415 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 WDR55Q9H6Y2 383 aaPredicted RBP20.85■□□□□ 0.93
CLN3-209ENST00000561689 WDR26Q9H7D7 661 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 PDE10AQ9Y233 779 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 APOBEC2Q9Y235 224 aaKnown RBP20.85■□□□□ 0.93
CLN3-209ENST00000561689 GOLGA8QA0A0J9YX86 632 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 A0A1B0GTL3 188 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 SLC5A10A0PJK1 596 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 GOLGA8OA6NCC3 632 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 GOLGA8NF8WBI6 632 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 E2F3O00716 465 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 C7P10643 843 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 TARSP26639 723 aaKnown RBP20.84■□□□□ 0.93
CLN3-209ENST00000561689 PDHA2P29803 388 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 RPIAP49247 311 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 HK2P52789 917 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 ABRQ12979 859 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 GALNTL6Q49A17 601 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 CLEC6AQ6EIG7 209 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 CFAP206Q8IYR0 622 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 PGBD3Q8N328 593 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 CFAP61Q8NHU2 1237 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 ZNF483Q8TF39 744 aaPredicted RBP20.84■□□□□ 0.93
CLN3-209ENST00000561689 SLC12A9Q9BXP2 914 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 TEX101Q9BY14 249 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 STN1Q9H668 368 aaKnown RBP20.84■□□□□ 0.93
CLN3-209ENST00000561689 ZBTB26Q9HCK0 441 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 C2orf42Q9NWW7 574 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 VTI1BQ9UEU0 232 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 PTBP2Q9UKA9 531 aaKnown RBP20.84■□□□□ 0.93
CLN3-209ENST00000561689 TRAF6Q9Y4K3 522 aa20.84■□□□□ 0.93
CLN3-209ENST00000561689 KRBA1A5PL33 1030 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 SLCO1B7G3V0H7 640 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 FCHO1O14526 889 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 TAPBPO15533 448 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 POP7O75817 140 aaKnown RBP20.83■□□□□ 0.93
CLN3-209ENST00000561689 C8GP07360 202 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 HSPA7P48741 367 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 LCP2Q13094 533 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 ZNF658BQ4V348 819 aaPredicted RBP20.83■□□□□ 0.93
CLN3-209ENST00000561689 ADHFE1Q8IWW8 467 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 GBP7Q8N8V2 638 aaPredicted RBP20.83■□□□□ 0.93
CLN3-209ENST00000561689 FOXJ1Q92949 421 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 RHBDF1Q96CC6 855 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 ZNF514Q96K75 400 aaPredicted RBP20.83■□□□□ 0.93
CLN3-209ENST00000561689 HGH1Q9BTY7 390 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 RDH14Q9HBH5 336 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 PARVBQ9HBI1 364 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 ARL15Q9NXU5 204 aa20.83■□□□□ 0.93
CLN3-209ENST00000561689 KRT87PA6NCN2 255 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 SKAP2O75563 359 aaPredicted RBP20.83■□□□□ 0.92
CLN3-209ENST00000561689 TRIM23P36406 574 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 MAP7D1Q3KQU3 841 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 NEK10Q6ZWH5 1172 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 ASB2Q96Q27 587 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 OR52B2Q96RD2 323 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 WWOXQ9NZC7 414 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 ARMCX1Q9P291 453 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 EBF1Q9UH73 591 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 FBXL21Q9UKT6 434 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 GPR34Q9UPC5 381 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 SORCS3Q9UPU3 1222 aa20.83■□□□□ 0.92
CLN3-209ENST00000561689 GFYI3L273 518 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 EPHA3P29320 983 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 GDF5P43026 501 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 PRKCQQ04759 706 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 ZP2Q05996 745 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 SFSWAPQ12872 951 aaKnown RBP20.82■□□□□ 0.92
CLN3-209ENST00000561689 UBXN2BQ14CS0 331 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 RBBP7Q16576 425 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 LACTB2Q53H82 288 aaPredicted RBP20.82■□□□□ 0.92
CLN3-209ENST00000561689 SULT1C3Q6IMI6 304 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 NEK5Q6P3R8 708 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 GLMNQ92990 594 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 C1QTNF7Q9BXJ2 289 aa20.82■□□□□ 0.92
CLN3-209ENST00000561689 TNPO3Q9Y5L0 923 aaKnown RBP20.82■□□□□ 0.92
CLN3-209ENST00000561689 MATN4O95460 622 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 PRDX3P30048 256 aaKnown RBP20.81■□□□□ 0.92
CLN3-209ENST00000561689 IGFALSP35858 605 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 DGKEP52429 567 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 FOXA1P55317 472 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 GAS6Q14393 721 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 PCBP2Q15366 365 aaKnown RBP eCLIP20.81■□□□□ 0.92
CLN3-209ENST00000561689 C11orf96Q7Z7L8 435 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 AGAP11Q8TF27 550 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 LINC00615Q96LM1 132 aaPredicted RBP20.81■□□□□ 0.92
CLN3-209ENST00000561689 KCNA7Q96RP8 456 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 TMEM79Q9BSE2 394 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 FOXQ1Q9C009 403 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 BTBD1Q9H0C5 482 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 POLMQ9NP87 494 aaPredicted RBP20.81■□□□□ 0.92
CLN3-209ENST00000561689 ANXA5P08758 320 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 HIST1H2AGP0C0S8 130 aaPredicted RBP20.81■□□□□ 0.92
CLN3-209ENST00000561689 HIST1H2ADP20671 130 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 BNIP1Q12981 228 aa20.81■□□□□ 0.92
CLN3-209ENST00000561689 NFE2L1Q14494 772 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 133.8 ms