RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PSMD13Q9UNM6 376 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 BPTFQ12830 3046 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ESYT3A0FGR9 886 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ESPNB1AK53 854 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 B4GAT1O43505 415 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 CSO75390 466 aaKnown RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 SPAG6O75602 509 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ERVK-10P10266 1014 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 AOAHP28039 575 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 CD1CP29017 333 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ATP5DP30049 168 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 FMO4P31512 558 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 PREPP48147 710 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 TARDBPQ13148 414 aaKnown RBP eCLIP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 EIF3IQ13347 325 aaKnown RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 CTBP1Q13363 440 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 CUL1Q13616 776 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 GPR18Q14330 331 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 FASTKD3Q14CZ7 662 aaKnown RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ISXQ2M1V0 245 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 TTLL9Q3SXZ7 439 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 WDR74Q6RFH5 385 aaPredicted RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 PIM3Q86V86 326 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 SLC26A11Q86WA9 606 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ANKMY2Q8IV38 441 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 LILRA3Q8N6C8 439 aaPredicted RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 INSM2Q96T92 566 aaPredicted RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 KIR3DX1Q9H7L2 352 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 PPANQ9NQ55 473 aaKnown RBP12.7□□□□□ -0.38
NEDD8-208ENST00000560427 LATS2Q9NRM7 1088 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ZDHHC18Q9NUE0 388 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 NSMCE4AQ9NXX6 385 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 MOCS1Q9NZB8 636 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 ZFATQ9P243 1243 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 CRYL1Q9Y2S2 319 aa12.7□□□□□ -0.38
NEDD8-208ENST00000560427 E5RI56 91 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 KDM1AO60341 852 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 SLCO2B1O94956 709 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 TOP3BO95985 862 aaKnown RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 RPN2P04844 631 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 ACADLP28330 430 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 PDHA2P29803 388 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 CAPZBP47756 277 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 PDX1P52945 283 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 INHBCP55103 352 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 MPP1Q00013 466 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 MGAT5Q09328 741 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 TRA2AQ13595 282 aaKnown RBP eCLIP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 KRT33BQ14525 404 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 DNTTIP2Q5QJE6 756 aaKnown RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 HP1BP3Q5SSJ5 553 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 TEDDM1Q5T9Z0 273 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 PLXDC1Q8IUK5 500 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 RELL1Q8IUW5 271 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 PALM2Q8IXS6 379 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 TBC1D21Q8IYX1 336 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 UNC5BQ8IZJ1 945 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 ACVR1CQ8NER5 493 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 OR4D9Q8NGE8 314 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 LKAAEAR1Q8TD35 194 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 TFGQ92734 400 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 CDKL2Q92772 493 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 LIN37Q96GY3 246 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 STRADBQ9C0K7 418 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 NRSN2Q9GZP1 204 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 RAB33BQ9H082 229 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 ZMYND15Q9H091 742 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 FBXO6Q9NRD1 293 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 DMGDHQ9UI17 866 aaKnown RBP12.69□□□□□ -0.38
NEDD8-208ENST00000560427 CDYLQ9Y232 598 aa12.69□□□□□ -0.38
NEDD8-208ENST00000560427 MN1Q10571 1320 aaPredicted RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 COL27A1Q8IZC6 1860 aaPredicted RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 IQCF5A8MTL0 148 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 EIF3FO00303 357 aaPredicted RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 MATN2O00339 956 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 NIPSNAP2O75323 286 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 UBXN7O94888 489 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ITGB6P18564 788 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 CHRM3P20309 590 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 CD9P21926 228 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 MAPK9P45984 424 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ZFP36L1Q07352 338 aaKnown RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 HSPA14Q0VDF9 509 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 CAMK2BQ13554 666 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 GBX1Q14549 363 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 PLCL1Q15111 1095 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 TRADDQ15628 312 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 AMZ1Q400G9 498 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ZNF789Q5FWF6 425 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 UGT3A1Q6NUS8 523 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 TMEM71Q6P5X7 295 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 TRMT10BQ6PF06 316 aaKnown RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 UNC5DQ6UXZ4 953 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ZNF761Q86XN6 746 aaPredicted RBP12.68□□□□□ -0.38
NEDD8-208ENST00000560427 SLITRK4Q8IW52 837 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 IFT20Q8IY31 132 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 KRT222Q8N1A0 295 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 ZBTB2Q8N680 514 aa12.68□□□□□ -0.38
NEDD8-208ENST00000560427 OR5K2Q8NHB8 316 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms