RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 LKAAEAR1Q8TD35 194 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 SLC7A6OSQ96CW6 309 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 OR52B2Q96RD2 323 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 RTKNQ9BST9 563 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 TBC1D10AQ9BXI6 508 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 DPEP2Q9H4A9 486 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 WDR55Q9H6Y2 383 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 IPPKQ9H8X2 491 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 RMI1Q9H9A7 625 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 KCNK12Q9HB15 430 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 SLC40A1Q9NP59 571 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 SEMA4BQ9NPR2 832 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 PHPT1Q9NRX4 125 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 FBXL12Q9NXK8 326 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 UTP6Q9NYH9 597 aaKnown RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 ARMCX1Q9P291 453 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 ITM2BQ9Y287 266 aa13.18□□□□□ -0.3
PTCH1-215ENST00000547672 MTF2Q9Y483 593 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-215ENST00000547672 PLXNB3Q9ULL4 1909 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 UBFD1O14562 309 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 INPP4BO15327 924 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 SPINT1O43278 529 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 MATN4O95460 622 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 KLF8O95600 359 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 GUCA1CO95843 209 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 RPN2P04844 631 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 HGFP14210 728 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 HOXB2P14652 356 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 LBPP18428 481 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 CA5AP35218 305 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 ARL1P40616 181 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 CCR10P46092 362 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 ACADVLP49748 655 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 SEC13P55735 322 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 NAA25Q14CX7 972 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 RPS6KA2Q15349 733 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 UGT3A2Q3SY77 523 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 C2orf27AQ580R0 203 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 AGBL4Q5VU57 503 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 ADGRG6Q86SQ4 1221 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 LONP2Q86WA8 852 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 DDIASQ8IXT1 998 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 SLC22A15Q8IZD6 547 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 PHC3Q8NDX5 983 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 ST13P5Q8NFI4 369 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 METTL6Q8TCB7 284 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 TWIST2Q8WVJ9 160 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 FBXL8Q96CD0 374 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 NTMT1Q9BV86 223 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 SLC29A3Q9BZD2 475 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 TTYH1Q9H313 450 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 NOL11Q9H8H0 719 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 EFCAB1Q9HAE3 211 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 FBRSL1Q9HCM7 1045 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 MRPL40Q9NQ50 206 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 CHD7Q9P2D1 2997 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 LIMD1Q9UGP4 676 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 EIF2B4Q9UI10 523 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 IKZF3Q9UKT9 509 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 HCN2Q9UL51 889 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 CNOT6Q9ULM6 557 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 PDE10AQ9Y233 779 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 FIS1Q9Y3D6 152 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 DNAJC15Q9Y5T4 150 aa13.17□□□□□ -0.3
PTCH1-215ENST00000547672 PRRC2BQ5JSZ5 2229 aaKnown RBP13.17□□□□□ -0.3
PTCH1-215ENST00000547672 SLC5A10A0PJK1 596 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 MGAT4DA6NG13 374 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 IGLON5A6NGN9 336 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 OR2AG2A6NM03 316 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 H3BM21 787 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 SLC28A1O00337 649 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 KMOO15229 486 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 GSC2O15499 205 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 MBTPS2O43462 519 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 CCNT2O60583 730 aaKnown RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 PSIP1O75475 530 aaKnown RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 SKAP2O75563 359 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 CIB2O75838 187 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 RASSF9O75901 435 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 KRT6AP02538 564 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 LMNAP02545 664 aaKnown RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 KRT6BP04259 564 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 KRT16P08779 473 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 COX4I1P13073 169 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 GM2AP17900 193 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 HMOX2P30519 316 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 DRD3P35462 400 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 WASP42768 502 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 SOX9P48436 509 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 KRT6CP48668 564 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 AGTR2P50052 363 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 MAD2L1Q13257 205 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 UBAP2LQ14157 1087 aaKnown RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 ADGRE1Q14246 886 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 PON2Q15165 354 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 SPRED3Q2MJR0 410 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 WASHC2DQ5SRD0 308 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 NAIF1Q69YI7 327 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-215ENST00000547672 OGFOD2Q6N063 350 aa13.16□□□□□ -0.3
PTCH1-215ENST00000547672 C16orf89Q6UX73 402 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms