RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	MMRN1	Q13201	1228 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	SMTNL2	Q2TAL5	461 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	ATP13A5	Q4VNC0	1218 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	BOLA3	Q53S33	107 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	CCDC183	Q5T5S1	534 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	C1orf189	Q5VU69	101 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	METRNL	Q641Q3	311 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	B3GNTL1	Q67FW5	361 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	PDPK2P	Q6A1A2	396 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	RPUSD3	Q6P087	351 aa	Known RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	MRPL14	Q6P1L8	145 aa	Known RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	IRF2BP2	Q7Z5L9	587 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	AMZ2	Q86W34	360 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	OOSP2	Q86WS3	158 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	TRAPPC5	Q8IUR0	188 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	OR4E2	Q8NGC2	313 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	PTER	Q96BW5	349 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	C14orf79	Q96F83	325 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	GBP5	Q96PP8	586 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	TRIB3	Q96RU7	358 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	TRIM56	Q9BRZ2	755 aa	Known RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	SPRTN	Q9H040	489 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	FAM60A	Q9NP50	221 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	SLC6A20	Q9NP91	592 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	SLC22A11	Q9NSA0	550 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	OLAH	Q9NV23	265 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	IMP3	Q9NV31	184 aa	Known RBP	10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	SERTAD3	Q9UJW9	196 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	POMT2	Q9UKY4	750 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	CDYL	Q9Y232	598 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	PADI2	Q9Y2J8	665 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	NEU2	Q9Y3R4	380 aa		10.84	□□□□□ -0.67
RNF4-218	ENST00000513284	LRRC53	A6NM62	1247 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284		C9J4A7	227 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	AGPS	O00116	658 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	KCNJ13	O60928	360 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	FTL	P02792	175 aa	Predicted RBP	10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	ATXN8OS	P0DMR3	200 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	RARA	P10276	462 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	PVR	P15151	417 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	AGXT	P21549	392 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	PRDX3	P30048	256 aa	Known RBP	10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	KLHL30	Q0D2K2	578 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284		Q0VFX4	171 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	GALNT2	Q10471	571 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	AIMP2	Q13155	320 aa	Known RBP	10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	TLR1	Q15399	786 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	ZFYVE27	Q5T4F4	411 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	PRAMEF13	Q5VWM6	474 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	CDHR3	Q6ZTQ4	885 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	LRRC49	Q8IUZ0	686 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	CNTD1	Q8N815	330 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	BCORP1	Q8N888	145 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	ACBD4	Q8NC06	268 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	ADAMTS18	Q8TE60	1221 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	ZFPM2	Q8WW38	1151 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	HSPH1	Q92598	858 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	CNDP1	Q96KN2	507 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	TSGA13	Q96PP4	275 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	VPS35	Q96QK1	796 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	KLHL25	Q9H0H3	589 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	HSD3B7	Q9H2F3	369 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	HAUS4	Q9H6D7	363 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	SYTL2	Q9HCH5	934 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	PCDH18	Q9HCL0	1135 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	PCM1	Q15154	2024 aa		10.83	□□□□□ -0.68
RNF4-218	ENST00000513284	NCOA6	Q14686	2063 aa	Predicted RBP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	TRGV8	A0A0C4DH27	118 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284		E7EQ34	232 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	BTN3A3	O00478	584 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	SOCS6	O14544	535 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	MFSD11	O43934	449 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A9	O60656	530 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	NADK	O95544	446 aa	Predicted RBP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	CD48	P09326	243 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	VCL	P18206	1134 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A6	P19224	532 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	CDH3	P22223	829 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A1	P22309	533 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A4	P22310	534 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	CA4	P22748	312 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	MST1	P26927	711 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	PBX1	P40424	430 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	FOLR3	P41439	243 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	PRKCI	P41743	596 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	CD86	P42081	329 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	CA7	P43166	264 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	GABRA4	P48169	554 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	ZNF165	P49910	485 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	TPM4	P67936	248 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	PIGH	Q14442	188 aa	Predicted RBP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	SLC9A5	Q14940	896 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	PRKD1	Q15139	912 aa	Predicted RBP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	AGAP7P	Q5VUJ5	663 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	FCRL6	Q6DN72	434 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	XKRX	Q6PP77	449 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	TMEM220	Q6QAJ8	160 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	FAM180A	Q6UWF9	173 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	APTX	Q7Z2E3	356 aa	Known RBP	10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms