RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 IZUMO1Q8IYV9 350 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 IQUBQ8NA54 791 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 XXYLT1Q8NBI6 393 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CCDC150Q8NCX0 1101 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 WDR36Q8NI36 951 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 TMEM171Q8WVE6 324 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 PRCCQ92733 491 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 MYLPFQ96A32 169 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 AZIN2Q96A70 460 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CCDC34Q96HJ3 373 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 C5orf34Q96MH7 638 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 DDX50Q9BQ39 737 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 MACROD1Q9BQ69 325 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 MESP1Q9BRJ9 268 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 FAM213AQ9BRX8 229 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 NACA2Q9H009 215 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 FAM204AQ9H8W3 233 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SGK2Q9HBY8 427 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 PRDM8Q9NQV8 689 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 ANLNQ9NQW6 1124 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 OLA1Q9NTK5 396 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 NCKIPSDQ9NZQ3 722 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SEPT10Q9P0V9 454 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 THAP10Q9P2Z0 257 aaPredicted RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 STOML2Q9UJZ1 356 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 KIAA1257Q9ULG3 409 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 SCML2Q9UQR0 700 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 TP53TG5Q9Y2B4 290 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 DAAM1Q9Y4D1 1078 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 CPQQ9Y646 472 aa3.99□□□□□ -1.77
USP54-217ENST00000498213 FLNAP21333 2647 aaKnown RBP3.99□□□□□ -1.77
USP54-217ENST00000498213 A0A087WWV3 80 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 CFAP69A5D8W1 941 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 FAM47DPA6NHR8 397 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 EFCAB7A8K855 629 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 A8MXQ7 604 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PRRT4C9JH25 899 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PRSS44E7EML9 344 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 F8VP50 259 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 AP4M1O00189 453 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PPP6CO00743 305 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PPEF2O14830 753 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 VILLO15195 856 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 FFAR2O15552 330 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SLC7A4O43246 635 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 COCHO43405 550 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 RGS10O43665 173 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 STX10O60499 249 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PPP6R2O75170 966 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 RASSF9O75901 435 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 USP1O94782 785 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 RASAL1O95294 804 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 GCNT3O95395 438 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ATP5BP06576 529 aaKnown RBP3.98□□□□□ -1.77
USP54-217ENST00000498213 ITGA2BP08514 1039 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 KRT19P08727 400 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 LIPCP11150 499 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ACADMP11310 421 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 BRAFP15056 766 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 TGM2P21980 687 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 BDNFP23560 247 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 CD27P26842 260 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ARRB1P49407 418 aaPredicted RBP3.98□□□□□ -1.77
USP54-217ENST00000498213 BCAT1P54687 386 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ZXDBP98169 803 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 INCA1Q0VD86 236 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 NFIL3Q16649 462 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 INSCQ1MX18 579 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PRR30Q53SZ7 412 aaPredicted RBP3.98□□□□□ -1.77
USP54-217ENST00000498213 ZNF667Q5HYK9 610 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 KIRREL2Q6UWL6 708 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 BEND5Q7L4P6 421 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 TRAPPC11Q7Z392 1133 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 CCDC186Q7Z3E2 898 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ANKS1BQ7Z6G8 1248 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SCN4BQ8IWT1 228 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SIRT6Q8N6T7 355 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.98□□□□□ -1.77
USP54-217ENST00000498213 OR2T3Q8NH03 318 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 DENND1AQ8TEH3 1009 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 NDRG1Q92597 394 aaKnown RBP3.98□□□□□ -1.77
USP54-217ENST00000498213 FBXO32Q969P5 355 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 DNAJC19Q96DA6 116 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SIPA1Q96FS4 1042 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ZNF778Q96MU6 729 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 CIPCQ9C0C6 399 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 ZNF518BQ9C0D4 1074 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 MTMR12Q9C0I1 747 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 GDF3Q9NR23 364 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SACM1LQ9NTJ5 587 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 TMLHEQ9NVH6 421 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 RRN3Q9NYV6 651 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SUN2Q9UH99 717 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SIX4Q9UIU6 781 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 FZD4Q9ULV1 537 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 PLA2G4CQ9UP65 541 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 USP22Q9UPT9 525 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 SMC3Q9UQE7 1217 aa3.98□□□□□ -1.77
USP54-217ENST00000498213 HBS1LQ9Y450 684 aaKnown RBP3.98□□□□□ -1.77
USP54-217ENST00000498213 TMEM131Q92545 1883 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms