RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 TMEM63CQ9P1W3 806 aa13.56□□□□□ -0.24
VARS-227ENST00000489979 CTTNBP2NLQ9P2B4 639 aa13.56□□□□□ -0.24
VARS-227ENST00000489979 SERTAD3Q9UJW9 196 aa13.56□□□□□ -0.24
VARS-227ENST00000489979 PADI2Q9Y2J8 665 aa13.56□□□□□ -0.24
VARS-227ENST00000489979 PCDHGA10Q9Y5H3 936 aa13.56□□□□□ -0.24
VARS-227ENST00000489979 COLEC10Q9Y6Z7 277 aa13.56□□□□□ -0.24
VARS-227ENST00000489979 ANKRD12Q6UB98 2062 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 SVILO95425 2214 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 A0A0A6YYK5 440 aaPredicted RBP13.55□□□□□ -0.24
VARS-227ENST00000489979 A0A1B0GTH6 734 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ARHGAP10A1A4S6 786 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 GSAPA4D1B5 854 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 LRRD1A4D1F6 860 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 E7EQ34 232 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 MASP2O00187 686 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 GAPDHSO14556 408 aaPredicted RBP13.55□□□□□ -0.24
VARS-227ENST00000489979 APOL1O14791 398 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 PPP1R12AO14974 1030 aaPredicted RBP13.55□□□□□ -0.24
VARS-227ENST00000489979 ZNF749O43361 778 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 BUD23O43709 281 aaKnown RBP13.55□□□□□ -0.24
VARS-227ENST00000489979 SERPING1P05155 500 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 POLBP06746 335 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 SLC35G4P0C7Q5 338 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ST6GAL1P15907 406 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 AGXTP21549 392 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 NDUFS1P28331 727 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 AKT1P31749 480 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 HADHAP40939 763 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ITGA9Q13797 1035 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 KRT33BQ14525 404 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 SSPNQ14714 243 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 LLGL1Q15334 1064 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 LONRF2Q1L5Z9 754 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 SIRPB2Q5JXA9 342 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 DCAF10Q5QP82 559 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 MLIPQ5VWP3 458 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ZNF385CQ66K41 422 aaPredicted RBP13.55□□□□□ -0.24
VARS-227ENST00000489979 SLC9A4Q6AI14 798 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 CUZD1Q86UP6 607 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ZADH2Q8N4Q0 377 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 SLC25A41Q8N5S1 370 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 CLEC1AQ8NC01 280 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ST6GALNAC3Q8NDV1 305 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 OR2L2Q8NH16 312 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 UBE2Q2Q8WVN8 375 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 MARVELD3Q96A59 401 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 IP6K3Q96PC2 410 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 DHRS4Q9BTZ2 278 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 ZBTB20Q9HC78 741 aaPredicted RBP13.55□□□□□ -0.24
VARS-227ENST00000489979 FAM153AQ9UHL3 310 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 CNTRLQ7Z7A1 2325 aa13.55□□□□□ -0.24
VARS-227ENST00000489979 LOC285095A0A1B0GVY8 99 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 MATN2O00339 956 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 PEX12O00623 359 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 HNRNPRO43390 633 aaKnown RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 MSL3P1P0C860 447 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 ATXN8OSP0DMR3 200 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 PTPN3P26045 913 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 PRDX3P30048 256 aaKnown RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 CD68P34810 354 aaPredicted RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 CHRNA4P43681 627 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 WNT3AP56704 352 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 TYRO3Q06418 890 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 FIGNQ5HY92 759 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 KDELC1Q6UW63 502 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 Q6ZS92 163 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 GLT6D1Q7Z4J2 308 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 DAAM2Q86T65 1068 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 LILRA3Q8N6C8 439 aaPredicted RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 BLOC1S5Q8TDH9 187 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 LCN9Q8WX39 176 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 SYN2Q92777 582 aaPredicted RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 TEKT5Q96M29 485 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 NRTNQ99748 197 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 MAK16Q9BXY0 300 aaKnown RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 KLHL25Q9H0H3 589 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 SRMSQ9H3Y6 488 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 UVRAGQ9P2Y5 699 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 PTRH2Q9Y3E5 179 aaKnown RBP13.54□□□□□ -0.24
VARS-227ENST00000489979 PKP3Q9Y446 797 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 C2CD3Q4AC94 2353 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 POLQO75417 2590 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 DOCK10Q96BY6 2186 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 APCP25054 2843 aa13.54□□□□□ -0.24
VARS-227ENST00000489979 FBN2P35556 2912 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 OTOGQ6ZRI0 2925 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 C3orf70A6NLC5 250 aaPredicted RBP13.53□□□□□ -0.24
VARS-227ENST00000489979 ZNF487B1APH4 448 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 BTN3A3O00478 584 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 LRRTM2O43300 516 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 MAP3K7O43318 606 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 KLHL41O60662 606 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 IPO13O94829 963 aaKnown RBP13.53□□□□□ -0.24
VARS-227ENST00000489979 HBQ1P09105 142 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 CBSLP0DN79 551 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 PVRP15151 417 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 CBSP35520 551 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 PTPRCAPQ14761 206 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 NAA30Q147X3 362 aaPredicted RBP13.53□□□□□ -0.24
VARS-227ENST00000489979 NR1I3Q14994 352 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms