RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 IFFO1Q0D2I5 559 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 HSPA14Q0VDF9 509 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 KRT33BQ14525 404 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 SEPT7Q16181 437 aaKnown RBP10.09□□□□□ -0.79
SKA1-204ENST00000488454 CTSL3PQ5NE16 218 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 PLEKHS1Q5SXH7 462 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 HECTD2Q5U5R9 776 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 ZNF549Q6P9A3 640 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 WASH2PQ6VEQ5 465 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 ZC3HC1Q86WB0 502 aaKnown RBP10.09□□□□□ -0.79
SKA1-204ENST00000488454 NRROSQ86YC3 692 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 CNPY4Q8N129 248 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 OR4C6Q8NH72 309 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 SKA2Q8WVK7 121 aaPredicted RBP10.09□□□□□ -0.79
SKA1-204ENST00000488454 KCNJ9Q92806 393 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 INPP5DQ92835 1189 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 FAM136AQ96C01 138 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 TSPAN17Q96FV3 270 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 NDNQ99608 321 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 RBBP8Q99708 897 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 CAAP1Q9H8G2 361 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 COG4Q9H9E3 785 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 WASH6PQ9NQA3 447 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 PRDM8Q9NQV8 689 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 ARGLU1Q9NWB6 273 aaPredicted RBP10.09□□□□□ -0.79
SKA1-204ENST00000488454 NCKIPSDQ9NZQ3 722 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 SIRPGQ9P1W8 387 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 KLHL42Q9P2K6 505 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 TBC1D29Q9UFV1 150 aa10.09□□□□□ -0.79
SKA1-204ENST00000488454 TRMT6Q9UJA5 497 aaKnown RBP10.09□□□□□ -0.79
SKA1-204ENST00000488454 TNRC6BQ9UPQ9 1833 aaKnown RBP10.09□□□□□ -0.79
SKA1-204ENST00000488454 USP34Q70CQ2 3546 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 MYLKQ15746 1914 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 TRBV23OR9-2A0A075B6M9 112 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 FAM95CA0A1B0GW59 222 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 ERVH48-1M5A8F1 160 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 FAM155BO75949 473 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 KRT38O76015 456 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 LDOC1O95751 146 aaPredicted RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 SDHBP21912 280 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 ABCG1P45844 678 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 DUSP3P51452 185 aaPredicted RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 LIMK1P53667 647 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 POU4F1Q01851 419 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 USP10Q14694 798 aaKnown RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 EFTUD2Q15029 972 aaKnown RBP eCLIP10.08□□□□□ -0.8
SKA1-204ENST00000488454 NR0B2Q15466 257 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 UBAP2Q5T6F2 1119 aaKnown RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 AGAP9Q5VTM2 703 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 ZCCHC8Q6NZY4 707 aaKnown RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 IYDQ6PHW0 289 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 ABRAXAS1Q6UWZ7 409 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 DBX2Q6ZNG2 339 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 FAM83HQ6ZRV2 1179 aaPredicted RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 SLC9B2Q86UD5 537 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 TRIM48Q8IWZ4 208 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 ZBTB2Q8N680 514 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 ARL10Q8N8L6 244 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 AVL9Q8NBF6 648 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 MAPK15Q8TD08 544 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 NETO1Q8TDF5 533 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 SLC44A1Q8WWI5 657 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 CXorf40BQ96DE9 158 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 FOPNLQ96NB1 174 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 PAFAH2Q99487 392 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 GPR21Q99679 349 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 CDC6Q99741 560 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 SLC32A1Q9H598 525 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 STN1Q9H668 368 aaKnown RBP10.08□□□□□ -0.8
SKA1-204ENST00000488454 PPCSQ9HAB8 311 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 LATS2Q9NRM7 1088 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 SLC24A2Q9UI40 661 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 SLC39A10Q9ULF5 831 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 PSMD13Q9UNM6 376 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 DHRS7Q9Y394 339 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 HEBP2Q9Y5Z4 205 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 SCN8AQ9UQD0 1980 aa10.08□□□□□ -0.8
SKA1-204ENST00000488454 PI4KAP42356 2102 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 KNL1Q8NG31 2342 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 KIR2DS5A0A0G2JLQ3 304 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 A0A0G2JNG1 304 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 SLC5A10A0PJK1 596 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 KIR2DS3K7RE56 304 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 TRIM38O00635 465 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 ZW10O43264 779 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 SIGLEC6O43699 453 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 SH3BP5O60239 455 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 KRT37O76014 449 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 C1QAP02745 245 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 ITGA2BP08514 1039 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 F3P13726 295 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 CD59P13987 128 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 STMN1P16949 149 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 CD9P21926 228 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 CNTFP26441 200 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 PREPP48147 710 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 RGS4P49798 205 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 CLCN7P51798 805 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 LIMK2P53671 638 aa10.07□□□□□ -0.8
SKA1-204ENST00000488454 CDKN2DP55273 166 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms