RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NXPE1Q8N323 547 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LRRC57Q8N9N7 239 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ADAMTS17Q8TE56 1095 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ALG3Q92685 438 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MIB2Q96AX9 1013 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SPATA13Q96N96 652 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 APOL2Q9BQE5 337 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCM2Q9BSQ5 444 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TWSG1Q9GZX9 223 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ACTL8Q9H568 366 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KCND1Q9NSA2 647 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 IMP3Q9NV31 184 aaKnown RBP11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 POMT2Q9UKY4 750 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 REXO2Q9Y3B8 237 aaKnown RBP11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 EPN1Q9Y6I3 576 aaPredicted RBP11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ICE1Q9Y2F5 2266 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 UTP20O75691 2785 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 UBA6A0AVT1 1052 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CDC14CA4D256 554 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OR6C74A6NCV1 312 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MKRN2OSH3BPM6 223 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RFPL1O75677 317 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CRTAMO95727 393 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CAPN1P07384 714 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ATP1B2P14415 290 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 NDUFS1P28331 727 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PBLDP30039 288 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 AKT1P31749 480 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RORAP35398 523 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CD151P48509 253 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CDKN1CP49918 316 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 EIF3EP60228 445 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 GPS2Q13227 327 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 UBAP2LQ14157 1087 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PLCL1Q15111 1095 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 GPR19Q15760 415 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 GPR33Q49SQ1 333 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PLEKHS1Q5SXH7 462 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 IZUMO3Q5VZ72 239 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PAPD7Q5XG87 772 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LCN10Q6JVE6 187 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 AADACL2Q6P093 401 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SNX20Q7Z614 316 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SYVN1Q86TM6 617 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OOSP2Q86WS3 158 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CDKL3Q8IVW4 592 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CFAP206Q8IYR0 622 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCDC110Q8TBZ0 833 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HM13Q8TCT9 377 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HEXDCQ8WVB3 486 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SEC14L1Q92503 715 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ULK4Q96C45 1275 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PANX2Q96RD6 677 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TRIM55Q9BYV6 548 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PITPNM3Q9BZ71 974 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LACRTQ9GZZ8 138 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 C1GALT1Q9NS00 363 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FEZ2Q9UHY8 353 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FARSAQ9Y285 508 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HEBP2Q9Y5Z4 205 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 COLEC10Q9Y6Z7 277 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ESPL1Q14674 2120 aa11.92□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCDC66A2RUB6 948 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KCNN4O15554 427 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CPNE3O75131 537 aaKnown RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 POLBP06746 335 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 POLR2CP19387 275 aaPredicted RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CYLC1P35663 651 aaPredicted RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HADHAP40939 763 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RPS18P62269 152 aaKnown RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 IL10RAQ13651 578 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SPA17Q15506 151 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FBXO38Q6PIJ6 1188 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MICALCLQ6ZW33 695 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DSELQ8IZU8 1212 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ACVR1CQ8NER5 493 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OR4E2Q8NGC2 313 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 THAP4Q8WY91 577 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PPP1R2P1Q96PQ5 205 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 NRTNQ99748 197 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FAM118BQ9BPY3 351 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TBL1YQ9BQ87 522 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TRIM5Q9C035 493 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TFB2MQ9H5Q4 396 aaKnown RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FAM96AQ9H5X1 160 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 COG4Q9H9E3 785 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SYTL2Q9HCH5 934 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 NLE1Q9NVX2 485 aaPredicted RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ZDHHC3Q9NYG2 299 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANKMY1Q9P2S6 941 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PLAAQ9Y263 795 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PCDHGA9Q9Y5G4 932 aaKnown RBP11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HIVEP3Q5T1R4 2406 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PCSK5Q92824 1860 aa11.91□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SOWAHDA6NJG2 315 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SLC9B1P1A6NJY1 282 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 H3BMH7 237 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MATN2O00339 956 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 BTN3A3O00478 584 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCL22O00626 93 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms