RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CALML6Q8TD86 181 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 RPRD1AQ96P16 312 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CAMKK2Q96RR4 588 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ING2Q9H160 280 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 SLC25A51Q9H1U9 297 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PPP1R3EQ9H7J1 279 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 HEXA-AS1Q9H8Q6 139 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FBRSL1Q9HCM7 1045 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM30AQ9NV96 361 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PCTPQ9UKL6 214 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 EDARQ9UNE0 448 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 HAS3O00219 553 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 NRP1O14786 923 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 EIF4E3Q8N5X7 224 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CCDC185Q8N715 623 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 GALNT11Q8NCW6 608 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 DENND6BQ8NEG7 585 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 C18orf25Q96B23 403 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF669Q96BR6 464 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 RADILQ96JH8 1075 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 BDH2Q9BUT1 245 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ADNPQ9H2P0 1102 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 EPS8L2Q9H6S3 715 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 STARD7Q9NQZ5 370 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 ADARB2Q9NS39 739 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 TUBAL3A6NHL2 446 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 M0R082 166 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 HUS1O60921 280 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 KERAO60938 352 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 BCL10O95999 233 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CYBBP04839 570 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 CYP11A1P05108 521 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 LHCGRP22888 699 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PCSK9Q8NBP7 692 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PLA2G15Q8NCC3 412 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 OR7G1Q8NGA0 311 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 KCNJ9Q92806 393 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 AGAP2Q99490 1192 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 KATNAL1Q9BW62 490 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PAIP1Q9H074 479 aaKnown RBP5.27□□□□□ -1.57
SYNE1-220ENST00000471834 FAM49BQ9NUQ9 324 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 HOXC10Q9NYD6 342 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 POU2F3Q9UKI9 436 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 PPP2R3BQ9Y5P8 575 aa5.27□□□□□ -1.57
SYNE1-220ENST00000471834 H3BQ06 376 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 WNT9AO14904 365 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MATN3O15232 486 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SRP72O76094 671 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FOSL2P15408 326 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FPR1P21462 350 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GNPDA1P46926 289 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SRP54P61011 504 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 RAD51Q06609 339 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LAMTOR4Q0VGL1 99 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CDK5R2Q13319 367 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CYTH1Q15438 398 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 OLFML2BQ68BL8 750 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LAMTOR1Q6IAA8 161 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 VASH1Q7L8A9 365 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 R3HCC1LQ7Z5L2 792 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 STRA8Q7Z7C7 330 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SLC51BQ86UW2 128 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SPATA2LQ8IUW3 424 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 NACC2Q96BF6 587 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SHCBP1LQ9BZQ2 653 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CHRAC1Q9NRG0 131 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 EIF3KQ9UBQ5 218 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 C3orf18Q9UK00 162 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 TBC1D24Q9ULP9 559 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 A0A0B4J293 547 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF99A8MXY4 864 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MYO1GB0I1T2 1018 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CYP7B1O75881 506 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CES1P23141 567 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PNPLA4P41247 253 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ALDH7A1P49419 539 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CENPAP49450 140 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ABHD18Q0P651 414 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PRKG2Q13237 762 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 KCNC3Q14003 757 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MARCH8Q5T0T0 291 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 UBXN11Q5T124 520 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GJC2Q5T442 439 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM107Q6UX40 140 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 HIPK1Q86Z02 1210 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GOT1L1Q8NHS2 421 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CASP10Q92851 521 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ATG4CQ96DT6 458 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 RNF31Q96EP0 1072 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CDKN2AIPNLQ96HQ2 116 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GTPBP2Q9BX10 602 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CAAP1Q9H8G2 361 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 VANGL2Q9ULK5 521 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 AZIN1O14977 448 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MYO1DO94832 1006 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 IGLV3-27P01718 113 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GSTM1P09488 218 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 HOXB1P14653 301 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 RPS3P23396 243 aaKnown RBP eCLIP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PSMA4P25789 261 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms