RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 GPR83Q9NYM4 423 aa3.89□□□□□ -1.79
LINC01040-201ENST00000425048 TSPYL4Q9UJ04 414 aa3.89□□□□□ -1.79
LINC01040-201ENST00000425048 WDR37Q9Y2I8 494 aa3.89□□□□□ -1.79
LINC01040-201ENST00000425048 EIF5BO60841 1220 aaKnown RBP3.88□□□□□ -1.79
LINC01040-201ENST00000425048 NDUFS3O75489 264 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 CLDN1O95832 211 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 EFNA1P20827 205 aaPredicted RBP3.88□□□□□ -1.79
LINC01040-201ENST00000425048 PIK3CAP42336 1068 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 LIMK2P53671 638 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 RPL7AP62424 266 aaKnown RBP3.88□□□□□ -1.79
LINC01040-201ENST00000425048 PIGZQ86VD9 579 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 ST8SIA4Q92187 359 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 SGK494Q96LW2 274 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 PIP5K1AQ99755 562 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 ZDHHC2Q9UIJ5 367 aa3.88□□□□□ -1.79
LINC01040-201ENST00000425048 ZNF646O15015 1829 aaPredicted RBP3.87□□□□□ -1.79
LINC01040-201ENST00000425048 IGHV3OR16-10A0A075B7F0 116 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 MED19A0JLT2 244 aaPredicted RBP3.87□□□□□ -1.79
LINC01040-201ENST00000425048 EPM2AB3EWF7 344 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 BCL2L11O43521 198 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 HCRTR2O43614 444 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 PRKRAO75569 313 aaKnown RBP3.87□□□□□ -1.79
LINC01040-201ENST00000425048 IGHV3-13P01766 116 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 UBL4AP11441 157 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 MSH2P43246 934 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 HARS2P49590 506 aaKnown RBP3.87□□□□□ -1.79
LINC01040-201ENST00000425048 E2F5Q15329 346 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 FIP1L1Q6UN15 594 aaKnown RBP3.87□□□□□ -1.79
LINC01040-201ENST00000425048 HOGA1Q86XE5 327 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 ARMC8Q8IUR7 673 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 CNTROBQ8N137 903 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 KBTBD8Q8NFY9 601 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 OR5AP2Q8NGF4 316 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 OR4C3Q8NH37 302 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 ARHGAP45Q92619 1136 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 HTRA1Q92743 480 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 RPP25Q9BUL9 199 aaKnown RBP3.87□□□□□ -1.79
LINC01040-201ENST00000425048 DGCR6LQ9BY27 220 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 TAS2R10Q9NYW0 307 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 GGA3Q9NZ52 723 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 PRO0461Q9UI25 63 aa3.87□□□□□ -1.79
LINC01040-201ENST00000425048 A0A1W2PPR1 153 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 DUX4L4P0CJ87 422 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 ACP2P11117 423 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 RBMS1P29558 406 aaKnown RBP3.86□□□□□ -1.79
LINC01040-201ENST00000425048 ICAM3P32942 547 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 GSCP56915 257 aaPredicted RBP3.86□□□□□ -1.79
LINC01040-201ENST00000425048 TMEM116Q8NCL8 245 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 TRPC4APQ8TEL6 797 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 UBE2Q2Q8WVN8 375 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 DAZLQ92904 295 aaKnown RBP3.86□□□□□ -1.79
LINC01040-201ENST00000425048 SLCO2A1Q92959 643 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 NUDCD1Q96RS6 583 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 RPS6KC1Q96S38 1066 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 TRAF4Q9BUZ4 470 aaPredicted RBP3.86□□□□□ -1.79
LINC01040-201ENST00000425048 THEGQ9P2T0 379 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 FBXL17Q9UF56 701 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 MUTYHQ9UIF7 546 aa3.86□□□□□ -1.79
LINC01040-201ENST00000425048 A0A1W2PN81 502 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 A0A1W2PRB8 838 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 TMEM8BA6NDV4 472 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 TGFB1I1O43294 461 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 ITIH1P19827 911 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 CHRNA7P36544 502 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 CEBPZQ03701 1054 aaKnown RBP3.85□□□□□ -1.79
LINC01040-201ENST00000425048 PRKCZQ05513 592 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 BIRC2Q13490 618 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 FASTKD3Q14CZ7 662 aaKnown RBP3.85□□□□□ -1.79
LINC01040-201ENST00000425048 ADALQ6DHV7 355 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 PTAR1Q7Z6K3 402 aaPredicted RBP3.85□□□□□ -1.79
LINC01040-201ENST00000425048 GALNT5Q7Z7M9 940 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 ADGRA1Q86SQ6 560 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 GALNT13Q8IUC8 556 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 LACC1Q8IV20 430 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 NIPA2Q8N8Q9 360 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 OLIG1Q8TAK6 271 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 ATP13A3Q9H7F0 1226 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 CHST11Q9NPF2 352 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 TUBE1Q9UJT0 475 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 EXO1Q9UQ84 846 aaKnown RBP3.85□□□□□ -1.79
LINC01040-201ENST00000425048 LAS1LQ9Y4W2 734 aaKnown RBP3.85□□□□□ -1.79
LINC01040-201ENST00000425048 RIPK3Q9Y572 518 aa3.85□□□□□ -1.79
LINC01040-201ENST00000425048 A0A1W2PQF6 199 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 ELOVL7A1L3X0 281 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 IDH3BO43837 385 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 GPIP06744 558 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 PAX8Q06710 450 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 GCNT6Q5T4J0 391 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 HPS6Q86YV9 775 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 TMTC2Q8N394 836 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 ARSGQ96EG1 525 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 SLA2Q9H6Q3 261 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 SMC4Q9NTJ3 1288 aa3.84□□□□□ -1.79
LINC01040-201ENST00000425048 LOC101059948A0A1B0GTJ6 334 aa3.83□□□□□ -1.8
LINC01040-201ENST00000425048 PLEKHD1A6NEE1 506 aa3.83□□□□□ -1.8
LINC01040-201ENST00000425048 GPC4O75487 556 aa3.83□□□□□ -1.8
LINC01040-201ENST00000425048 XBP1P17861 261 aa3.83□□□□□ -1.8
LINC01040-201ENST00000425048 CA6P23280 308 aa3.83□□□□□ -1.8
LINC01040-201ENST00000425048 ACADLP28330 430 aa3.83□□□□□ -1.8
LINC01040-201ENST00000425048 GPR143P51810 404 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms