RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CCNYL1Q8N7R7 359 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 CFAP61Q8NHU2 1237 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 PHF21BQ96EK2 531 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 HIST1H2AHQ96KK5 128 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 BMFQ96LC9 184 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 ATOH8Q96SQ7 321 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 HIST1H2AJQ99878 128 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 EGFL8Q99944 293 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 TIMM29Q9BSF4 260 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 H2AFJQ9BTM1 129 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 OSGEPL1Q9H4B0 414 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 UTP6Q9NYH9 597 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 NCKIPSDQ9NZQ3 722 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 SUFUQ9UMX1 484 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 OARD1Q9Y530 152 aa16.79■□□□□ 0.28
CCDC28B-202ENST00000421922 EML5Q05BV3 1969 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 SLC5A10A0PJK1 596 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 NCF1BA6NI72 391 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 A8MT66 165 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 NCF1CA8MVU1 366 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 TARM1B6A8C7 271 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 SLC16A5O15375 505 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 KCNJ13O60928 360 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 CATP04040 527 aaKnown RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 CEACAM5P06731 702 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 ENO2P09104 434 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 SBK3P0C264 359 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 FGF3P11487 239 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 NCF1P14598 390 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 HOXA6P31267 233 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 GABPB1Q06547 395 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 PFKFB4Q16877 469 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 ABI3BPQ7Z7G0 1075 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 C11orf74Q86VG3 221 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 LRRC34Q8IZ02 419 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 SLC22A15Q8IZD6 547 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 RGL4Q8IZJ4 473 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 PTGR2Q8N8N7 351 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 KLHDC7BQ96G42 594 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 HSPA12BQ96MM6 686 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 OR2M4Q96R27 311 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 PITPNM3Q9BZ71 974 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 MIR1-1HGQ9H1L0 117 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 DPEP2Q9H4A9 486 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 EBF2Q9HAK2 575 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 FGF22Q9HCT0 170 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 PRMT8Q9NR22 394 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 TRIOO75962 3097 aa16.78■□□□□ 0.28
CCDC28B-202ENST00000421922 NEMP2A6NFY4 417 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 TMEM114B3SHH9 223 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 IFRD1O00458 451 aaPredicted RBP16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 TNFRSF10CO14798 259 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 HSPA4LO95757 839 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 SLC35G4P0C7Q5 338 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 THEGLP0DJG4 465 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 FNTBP49356 437 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 SEC24CP53992 1094 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 DNAJB13P59910 316 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 NFKB2Q00653 900 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 CSTF1Q05048 431 aaKnown RBP16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 BST1Q10588 318 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 ABRQ12979 859 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 NFE2L1Q14494 772 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 TGFBIQ15582 683 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 WDR45BQ5MNZ6 344 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 TSSK4Q6SA08 328 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 SBSNQ6UWP8 590 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 RD3Q7Z3Z2 195 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 WDR5BQ86VZ2 330 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 VRK3Q8IV63 474 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 TMEM151AQ8N4L1 468 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 OR13H1Q8NG92 308 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 MCOLN3Q8TDD5 553 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 SLC6A18Q96N87 628 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 MRPL40Q9NQ50 206 aaKnown RBP16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 KLC4Q9NSK0 619 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 EIF2B4Q9UI10 523 aaKnown RBP16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 IKZF3Q9UKT9 509 aa16.77■□□□□ 0.27
CCDC28B-202ENST00000421922 C10orf142B7Z368 130 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 FFAR2O15552 330 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 GUCA1CO95843 209 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 SLC1A6P48664 564 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 NAGLUP54802 743 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 DMWDQ09019 674 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 PYCR3Q53H96 274 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 TTC23LQ6PF05 361 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 CYHR1Q6ZMK1 362 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 LPCAT2Q7L5N7 544 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 C11orf96Q7Z7L8 435 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 LONP2Q86WA8 852 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 DCP2Q8IU60 420 aaKnown RBP16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 CRLF3Q8IUI8 442 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 C1orf210Q8IVY1 113 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 LILRA3Q8N6C8 439 aaPredicted RBP16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 PDXPQ96GD0 296 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 RABEP2Q9H5N1 569 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 RDH14Q9HBH5 336 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 PARVBQ9HBI1 364 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 FGFR1OP2Q9NVK5 253 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 THAP1Q9NVV9 213 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms