RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 AAGABQ6PD74 315 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ADAMTSL4Q6UY14 1074 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 AMZ2Q86W34 360 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 SNX32Q86XE0 403 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 FNDC5Q8NAU1 212 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 METTL2AQ96IZ6 378 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 GSTO2Q9H4Y5 243 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 Q9H521 79 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 GPRC5BQ9NZH0 403 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 MOSPD1Q9UJG1 213 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 LEF1Q9UJU2 399 aaPredicted RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 TMED5Q9Y3A6 229 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 IGLV3-16A0A075B6K0 115 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 GSC2O15499 205 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 PI15O43692 258 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 SGTAO43765 313 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 NPPAP01160 153 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 AOAHP28039 575 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 SLC6A11P48066 632 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 PRLHRP49683 370 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ERVK-8P63133 956 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 COQ5Q5HYK3 327 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 HENMT1Q5T8I9 393 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 SORCS1Q8WY21 1168 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 SIPA1Q96FS4 1042 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 OSBPL6Q9BZF3 934 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 NOL11Q9H8H0 719 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 ADA2Q9NZK5 511 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 ZIM2Q9NZV7 527 aa8.24□□□□□ -1.09
USP54-203ENST00000418501 TSR3Q9UJK0 312 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.24□□□□□ -1.09
USP54-203ENST00000418501 DOCK4Q8N1I0 1966 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 LOC100653049A0A140TA62 436 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 MGAT4DA6NG13 374 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 KRT34O76011 436 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 HSD3B1P14060 373 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 IDSP22304 550 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 HSD3B2P26439 372 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 CDH13P55290 713 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 BTKQ06187 659 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 FOXM1Q08050 763 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBL3Q12788 808 aaKnown RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 PRKG2Q13237 762 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 C9orf64Q5T6V5 341 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 HSD11B1LQ7Z5J1 315 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 SYTL1Q8IYJ3 562 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 PGAM4Q8N0Y7 254 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 ACVR1CQ8NER5 493 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 PTERQ96BW5 349 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 FBXL8Q96CD0 374 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 ZFYVE19Q96K21 471 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 PPP1R36Q96LQ0 422 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 DPEP2Q9H4A9 486 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 CACNA2D2Q9NY47 1150 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 EIF2B4Q9UI10 523 aaKnown RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 GREB1Q4ZG55 1949 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 NEMP2A6NFY4 417 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 MRASO14807 208 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 INPP4BO15327 924 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 HLA-EP13747 358 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 SP100P23497 879 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 PBLDP30039 288 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 OXTRP30559 389 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 AKT2P31751 481 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 GRK3P35626 688 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 GNPDA1P46926 289 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 SMAD4Q13485 552 aaKnown RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 TSTA3Q13630 321 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 INPP5AQ14642 412 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 SLC9B1Q4ZJI4 515 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 ACSBG2Q5FVE4 666 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 LIPJQ5W064 366 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 SYCE2Q6PIF2 218 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 NAPRTQ6XQN6 538 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 USP30Q70CQ3 517 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 GOLGA7Q7Z5G4 137 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 AGAP11Q8TF27 550 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 SELENOMQ8WWX9 145 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 EBF4Q9BQW3 602 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 EFCAB11Q9BUY7 163 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TRIT1Q9H3H1 467 aaKnown RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 PRSS16Q9NQE7 514 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 PCTPQ9UKL6 214 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 FZD4Q9ULV1 537 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3DA0A087WVF3 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3IA0A087WXS9 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3EA0A087X179 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3KA0A087X1G2 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3FA6NER0 549 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3LB9A6J9 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 FPGTO14772 594 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 MMP20O60882 483 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 ATP6V1G2O95670 118 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3HP0C7X1 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TIE1P35590 1138 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 UBAP2LQ14157 1087 aaKnown RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 POM121L1PQ3SYA9 428 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3GQ6DHY5 549 aa8.23□□□□□ -1.09
USP54-203ENST00000418501 FAM109BQ6ICB4 259 aaPredicted RBP8.23□□□□□ -1.09
USP54-203ENST00000418501 TBC1D3CQ6IPX1 549 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms