RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PARVBQ9HBI1 364 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 AIG1Q9NVV5 245 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 MTRRQ9UBK8 725 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 WARS2Q9UGM6 360 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 A0A0C4DFX4 3053 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 MYO15AQ9UKN7 3530 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 FAM92AA1XBS5 289 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 WDR47O94967 919 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 LRG1P02750 347 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 CSF2RAP15509 400 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 PTGER3P43115 390 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 NTHL1P78549 312 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 LAMB3Q13751 1172 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 ERMP1Q7Z2K6 904 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 OR52E6Q96RD3 313 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 DGCR6LQ9BY27 220 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 EBF1Q9UH73 591 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 LSM7Q9UK45 103 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 F5P12259 2224 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 SCN4AP35499 1836 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 OR7A17O14581 309 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 RPLP2P05387 115 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 IL7RP16871 459 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 CST5P28325 142 aaPredicted RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 RPIAP49247 311 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 ERVK-8P63133 956 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 LDLRAP1Q5SW96 308 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 GAREM2Q75VX8 874 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 RBM23Q86U06 439 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 KLHDC8BQ8IXV7 354 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 DTWD1Q8N5C7 304 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 ZBTB18Q99592 522 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 NAA50Q9GZZ1 169 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 POLR1BQ9H9Y6 1135 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 SLC22A14Q9Y267 594 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 TCRBV3S1A0A5B6 114 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 SCAMP1O15126 338 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 DENRO43583 198 aaKnown RBP13.15□□□□□ -0.31
VPS54-203ENST00000409558 ZDHHC11BP0C7U3 371 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 PABPC4LP0CB38 370 aaKnown RBP13.15□□□□□ -0.31
VPS54-203ENST00000409558 POLR2IP36954 125 aaKnown RBP13.15□□□□□ -0.31
VPS54-203ENST00000409558 RANBP1P43487 201 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 STT3AP46977 705 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 GALK1P51570 392 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 CLCN7P51798 805 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 XIAPP98170 497 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 TMEM25Q86YD3 366 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 VRK3Q8IV63 474 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 ADGRG5Q8IZF4 528 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 TCEAL4Q96EI5 215 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 ZNF558Q96NG5 402 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 HOPXQ9BPY8 73 aaPredicted RBP13.15□□□□□ -0.31
VPS54-203ENST00000409558 KLF16Q9BXK1 252 aaPredicted RBP13.15□□□□□ -0.31
VPS54-203ENST00000409558 INVSQ9Y283 1065 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 ARIH1Q9Y4X5 557 aaPredicted RBP13.15□□□□□ -0.31
VPS54-203ENST00000409558 INSL5Q9Y5Q6 135 aa13.15□□□□□ -0.31
VPS54-203ENST00000409558 DOCK4Q8N1I0 1966 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 SAP18O00422 153 aaKnown RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 SLC22A2O15244 555 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 H6PDO95479 791 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 F11P03951 625 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 TACR1P25103 407 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 AARS2Q5JTZ9 985 aaKnown RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 SBSNQ6UWP8 590 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 DPY19L3Q6ZPD9 716 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 RGL4Q8IZJ4 473 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 OSBPL11Q9BXB4 747 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ELOVL6Q9H5J4 265 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 SLC6A13Q9NSD5 602 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 IL37Q9NZH6 218 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ADGRE2Q9UHX3 823 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 PLK4O00444 970 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 PGLSO95336 258 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ESR1P03372 595 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 LSM3P62310 102 aaKnown RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 VAC14Q08AM6 782 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 MERTKQ12866 999 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 SLC8B1Q6J4K2 584 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 LSRQ86X29 649 aaPredicted RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 DHRSXQ8N5I4 330 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ZBTB2Q8N680 514 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 GPR150Q8NGU9 434 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 KCNJ9Q92806 393 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ROPN1LQ96C74 230 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 PCDH12Q9NPG4 1184 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ALBP02768 609 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 C8BP07358 591 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 FGF4P08620 206 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 XPAP23025 273 aaPredicted RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 PREPP48147 710 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 DGKEP52429 567 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ACVR1Q04771 509 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 ADNP2Q6IQ32 1131 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 TMEM199Q8N511 208 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 HJURPQ8NCD3 748 aaPredicted RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 OLAHQ9NV23 265 aa13.14□□□□□ -0.31
VPS54-203ENST00000409558 DUS2Q9NX74 493 aaKnown RBP13.14□□□□□ -0.31
VPS54-203ENST00000409558 EPB42P16452 691 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 MTHFRP42898 656 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 ACADVLP49748 655 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms