RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HIC2Q96JB3 615 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 RPF2Q9H7B2 306 aaKnown RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 HEBP1Q9NRV9 189 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 KIAA1522Q9P206 1035 aaPredicted RBP19.02■□□□□ 0.64
COL9A3-201ENST00000343916 ANGPTL3Q9Y5C1 460 aa19.02■□□□□ 0.64
COL9A3-201ENST00000343916 TCRBV5S2A0A599 114 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 VILLO15195 856 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 SOCS5O75159 536 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 GLUD1P00367 558 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 GNAO1P09471 354 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 FASP25445 335 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 RPL10P27635 214 aaKnown RBP19.01■□□□□ 0.63
COL9A3-201ENST00000343916 SERPINA4P29622 427 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 PRMT2P55345 433 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 OR4D2P58180 307 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 MTPNP58546 118 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 RPL38P63173 70 aaKnown RBP19.01■□□□□ 0.63
COL9A3-201ENST00000343916 EMX2Q04743 252 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 APOFQ13790 326 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 MAP7Q14244 749 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 ARHGEF6Q15052 776 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 SGO1Q5FBB7 561 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 IRAK1BP1Q5VVH5 260 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 LRRC66Q68CR7 880 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 CRTC1Q6UUV9 634 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 HTR3DQ70Z44 454 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 NXPE1Q8N323 547 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 OAZ3Q9UMX2 235 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 DLGAP1O14490 977 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 ANKRD28O15084 1053 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 SRCP12931 536 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 SLC2A4P14672 509 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 HLA-FP30511 346 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 MPPE1Q53F39 396 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 KRT80Q6KB66 452 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 DLEU7Q6UYE1 221 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 PTRH1Q86Y79 214 aaKnown RBP19.01■□□□□ 0.63
COL9A3-201ENST00000343916 FIBINQ8TAL6 211 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 RHBDF1Q96CC6 855 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 DGCR14Q96DF8 476 aaKnown RBP19.01■□□□□ 0.63
COL9A3-201ENST00000343916 SEPHS2Q99611 448 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 OPTCQ9UBM4 332 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 KLQ9UEF7 1012 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 CCL27Q9Y4X3 112 aa19.01■□□□□ 0.63
COL9A3-201ENST00000343916 CCL5P13501 91 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 HRH2P25021 359 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 MNX1P50219 401 aaPredicted RBP19■□□□□ 0.63
COL9A3-201ENST00000343916 ARHGEF7Q14155 803 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 MYLK3Q32MK0 819 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 FAM43BQ6ZT52 329 aaPredicted RBP19■□□□□ 0.63
COL9A3-201ENST00000343916 TMC8Q8IU68 726 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 ASIC4Q96FT7 647 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 HTATIP2Q9BUP3 242 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 CD244Q9BZW8 370 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 CAAP1Q9H8G2 361 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 ZFP14Q9HCL3 533 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 TMEM39AQ9NV64 488 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 ATXN10Q9UBB4 475 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 TBX21Q9UL17 535 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 CCL26Q9Y258 94 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 LAG3P18627 525 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 CCT8P50990 548 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 MACC1Q6ZN28 852 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 HID1Q8IV36 788 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 FAM47BQ8NA70 645 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 TRPV3Q8NET8 790 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 FAM81AQ8TBF8 368 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 ISG20Q96AZ6 181 aaKnown RBP19■□□□□ 0.63
COL9A3-201ENST00000343916 EPB41L1Q9H4G0 881 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 OLAHQ9NV23 265 aa19■□□□□ 0.63
COL9A3-201ENST00000343916 MBD1Q9UIS9 605 aaPredicted RBP19■□□□□ 0.63
COL9A3-201ENST00000343916 RNF103-CHMP3A0A140T963 221 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 LEFTY2O00292 366 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ASLP04424 464 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ENO2P09104 434 aaPredicted RBP18.99■□□□□ 0.63
COL9A3-201ENST00000343916 LHCGRP22888 699 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ITGB8P26012 769 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 MAPK8P45983 427 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ATP13A5Q4VNC0 1218 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 GRAMD4Q6IC98 578 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 MYLIPQ8WY64 445 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 MTFMTQ96DP5 389 aaKnown RBP18.99■□□□□ 0.63
COL9A3-201ENST00000343916 LRRC3Q9BY71 257 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 SMOXQ9NWM0 555 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 LRG1P02750 347 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 GGT5P36269 586 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 CSNK1DP48730 415 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 EEFSECP57772 596 aaKnown RBP18.99■□□□□ 0.63
COL9A3-201ENST00000343916 SLC7A9P82251 487 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 PTSQ03393 145 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 PYCR3Q53H96 274 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 CPXM2Q8N436 756 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ZFP28Q8NHY6 868 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 TFAP2CQ92754 450 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 CENPNQ96H22 339 aaPredicted RBP18.99■□□□□ 0.63
COL9A3-201ENST00000343916 SLC46A2Q9BY10 475 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ANKRD60Q9BZ19 345 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ZDHHC6Q9H6R6 413 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 NDUFA13Q9P0J0 144 aa18.99■□□□□ 0.63
COL9A3-201ENST00000343916 ZNHIT2Q9UHR6 403 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms