RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NPNTQ6UXI9 565 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 RBMXL3Q8N7X1 1067 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 ACVR1CQ8NER5 493 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 ZNF398Q8TD17 642 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 BLOC1S5Q8TDH9 187 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 LINC00615Q96LM1 132 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 TLR10Q9BXR5 811 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC7A5P2Q9GIP4 190 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 SRMSQ9H3Y6 488 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 PCMTD2Q9NV79 361 aa14.37□□□□□ -0.11
CCDC88B-201ENST00000301897 CNTRLQ7Z7A1 2325 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 DIDO1Q9BTC0 2240 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC9B1P1A6NJY1 282 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 A6NL46 340 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 PRAMEF1O95521 474 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 GYPCP04921 128 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 CAPN1P07384 714 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 NFKB1P19838 968 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 CD68P34810 354 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 ANP32AP39687 249 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 DYNLT1P63172 113 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 ABRQ12979 859 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 MPP3Q13368 585 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 PRR30Q53SZ7 412 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 ZRANB3Q5FWF4 1079 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 FAM198BQ6UWH4 519 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 RHOT2Q8IXI1 618 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC25A41Q8N5S1 370 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 ZBTB2Q8N680 514 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 CLEC1AQ8NC01 280 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC35G2Q8TBE7 412 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 HM13Q8TCT9 377 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 HEXDCQ8WVB3 486 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 LCN9Q8WX39 176 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 TM9SF4Q92544 642 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 FER1L6-AS2Q96M78 137 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 C5orf34Q96MH7 638 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 FCRL5Q96RD9 977 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 FSD1LQ9BXM9 530 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 PACSIN1Q9BY11 444 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 DEF6Q9H4E7 631 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 KLHL8Q9P2G9 620 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC5A6Q9Y289 635 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 B3GNT3Q9Y2A9 372 aa14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC88B-201ENST00000301897 GSAPA4D1B5 854 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 C2orf81A6NN90 581 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 GAPDHSO14556 408 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 IPO13O94829 963 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 LDLRP01130 860 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 RNF224P0DH78 156 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 SLC1A1P43005 524 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 WASHC5Q12768 1159 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 ATP1A4Q13733 1029 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 ELOAQ14241 798 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 NOMO1Q15155 1222 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 LYPLAL1Q5VWZ2 237 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 LCN10Q6JVE6 187 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 DUS1LQ6P1R4 473 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 ZNF449Q6P9G9 518 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 DET1Q7L5Y6 550 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 GPR135Q8IZ08 494 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 OR4E2Q8NGC2 313 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 OR1L3Q8NH93 324 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 DCUN1D1Q96GG9 259 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 MRGPRX2Q96LB1 330 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 PITPNM3Q9BZ71 974 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 LUZP4Q9P127 313 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 TRHDEQ9UKU6 1024 aa14.35□□□□□ -0.11
CCDC88B-201ENST00000301897 C17orf113A0A1B0GUU1 675 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 CFAP99D6REC4 459 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 E7EQ34 232 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 IFRD1O00458 451 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 PEX12O00623 359 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 GPR39O43194 453 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 CBX6O95503 412 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 TPM3P06753 285 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 PRDX3P30048 256 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 DCTP40126 519 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 CHRNA4P43681 627 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ARCN1P48444 511 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 SSPNQ14714 243 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 NR6A1Q15406 480 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 TAF1AQ15573 450 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ZNF789Q5FWF6 425 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 FAM182AQ5T1J6 154 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 PRAMEF17Q5VTA0 474 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 IGFL3Q6UXB1 125 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 PID1Q7Z2X4 250 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 TTC13Q8NBP0 860 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 IPMKQ8NFU5 416 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 SPDYE1Q8NFV5 336 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 RNF25Q96BH1 459 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ULK4Q96C45 1275 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 SNRNP40Q96DI7 357 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 RMDN2Q96LZ7 410 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 C19orf43Q9BQ61 176 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 VPS37BQ9H9H4 285 aa14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ZNHIT6Q9NWK9 470 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-201ENST00000301897 ERRFI1Q9UJM3 462 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms