RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 PDE12Q6L8Q7 609 aaKnown RBP13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 KLHL35Q6PF15 583 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CRELD2Q6UXH1 353 aaPredicted RBP13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 LINGO2Q7L985 606 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TTC29Q8NA56 475 aaPredicted RBP13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 OR2L3Q8NG85 312 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SPPL2BQ8TCT7 592 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CYB5D2Q8WUJ1 264 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 BCAS3Q9H6U6 928 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 MST1RQ04912 1400 aa13.39□□□□□ -0.27
CHRFAM7A-201ENST00000299847 NME6O75414 186 aaPredicted RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TM7SF2O76062 418 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ALPIP09923 528 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CCNCP24863 283 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 RPS9P46781 194 aaKnown RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SWI5Q1ZZU3 235 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CLEC12AQ5QGZ9 265 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ADGRD1Q6QNK2 874 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 KCTD8Q6ZWB6 473 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SLC24A5Q71RS6 500 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 OR5T3Q8NGG3 340 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SCLYQ96I15 445 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 C12orf66Q96MD2 445 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SLC28A3Q9HAS3 691 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CHRNB2P17787 502 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CDH4P55283 916 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TSTD2Q5T7W7 516 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TMPRSS9Q7Z410 1059 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 PYCR2Q96C36 320 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CCDC115Q96NT0 180 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 WASF2Q9Y6W5 498 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 LAG3P18627 525 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 PCBP1Q15365 356 aaKnown RBP eCLIP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ZFP69Q49AA0 526 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 VARS2Q5ST30 1063 aaKnown RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SLC9A4Q6AI14 798 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 GDF6Q6KF10 455 aaPredicted RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TRMT10BQ6PF06 316 aaKnown RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TMEM192Q8IY95 271 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 HDDC3Q8N4P3 179 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 OR13C4Q8NGS5 318 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SNX27Q96L92 541 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 DHRS1Q96LJ7 313 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 KCNC2Q96PR1 638 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 EBF3Q9H4W6 596 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 IFT46Q9NQC8 304 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 MAGEB17A8MXT2 336 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CXCR6O00574 342 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 USP2O75604 605 aaPredicted RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 LIMK2P53671 638 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 JAM2P57087 298 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CAP1Q01518 475 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 FAM174BQ3ZCQ3 159 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CYP2U1Q7Z449 544 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ZNF598Q86UK7 904 aaKnown RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ARMC10Q8N2F6 343 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TNFRSF25Q93038 417 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SLC25A36Q96CQ1 311 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 BRD7Q9NPI1 651 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 DPPA5A6NC42 116 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 MATN3O15232 486 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CLPXO76031 633 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 PGRP06401 933 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 MAN2A2P49641 1150 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CCR3P51677 355 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 INHBEP58166 350 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CHADLQ6NUI6 762 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ZNF554Q86TJ5 538 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ZNF615Q8N8J6 731 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 PCDHAC1Q9H158 963 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SRMSQ9H3Y6 488 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ZNF358Q9NW07 568 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 UCKL1Q9NWZ5 548 aa13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SMPD3Q9NY59 655 aaPredicted RBP13.38□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SNX4O95219 450 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 GJA1P17302 382 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 VLDLRP98155 873 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 GPR153Q6NV75 609 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TRPV1Q8NER1 839 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 PIGXQ8TBF5 258 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 EBF4Q9BQW3 602 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ZNF221Q9UK13 617 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 AJAP1Q9UKB5 411 aaPredicted RBP13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 PRDM4Q9UKN5 801 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 SNX7Q9UNH6 387 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TELO2Q9Y4R8 837 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 A0A0X1KG70 313 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 HOXA10P31260 410 aaPredicted RBP13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TIE1P35590 1138 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ARL2P36404 184 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 NCBP2P52298 156 aaKnown RBP eCLIP13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 NDUFA9Q16795 377 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 ATP13A5Q4VNC0 1218 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TATDN1Q6P1N9 297 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 FSTL5Q8N475 847 aaPredicted RBP13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 IFT27Q9BW83 186 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 COQ10BQ9H8M1 238 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 AGLP35573 1532 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 TCRBV7S3A2A0A539 114 aa13.37□□□□□ -0.27
CHRFAM7A-201ENST00000299847 CHST10O43529 356 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms