RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 LHCGRP22888 699 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 MAPK8P45983 427 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 CSNK1DP48730 415 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 OR4D2P58180 307 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 MTPNP58546 118 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 SLC7A9P82251 487 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 TXNL4AP83876 142 aaKnown RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 HMGCS1Q01581 520 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 PLOD1Q02809 727 aaPredicted RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 APOFQ13790 326 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 PTGR1Q14914 329 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 RHBDF1Q96CC6 855 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 MRPS26Q9BYN8 205 aaKnown RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 OPTCQ9UBM4 332 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 MBD1Q9UIS9 605 aaPredicted RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 CCL27Q9Y4X3 112 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 LRG1P02750 347 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 SLC2A4P14672 509 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 GRAMD4Q6IC98 578 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 DLEU7Q6UYE1 221 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 MACC1Q6ZN28 852 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 PTRH1Q86Y79 214 aaKnown RBP19.7■□□□□ 0.74
VPS53-201ENST00000291074 TOX2Q96NM4 488 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 HTATIP2Q9BUP3 242 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 SLC46A2Q9BY10 475 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 CD244Q9BZW8 370 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 RPF2Q9H7B2 306 aaKnown RBP19.7■□□□□ 0.74
VPS53-201ENST00000291074 KLQ9UEF7 1012 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 CSF2RAP15509 400 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 HRH2P25021 359 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 FASP25445 335 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 WDR5P61964 334 aaKnown RBP19.7■□□□□ 0.74
VPS53-201ENST00000291074 ATP13A5Q4VNC0 1218 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 NHSL2Q5HYW2 709 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 SLC22A17Q8WUG5 538 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 MYLIPQ8WY64 445 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 ASIC4Q96FT7 647 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 CORO1BQ9BR76 489 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 ZDHHC6Q9H6R6 413 aa19.7■□□□□ 0.74
VPS53-201ENST00000291074 TRAV19A0A0A6YYK7 116 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 SMIM31A0A1B0GVY4 71 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 DLGAP1O14490 977 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ACRP10323 421 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 EEFSECP57772 596 aaKnown RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 B4GALNT1Q00973 533 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ASTLQ6HA08 431 aaPredicted RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 RBM44Q6ZP01 1051 aaKnown RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 ISG20Q96AZ6 181 aaKnown RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 NMD3Q96D46 503 aaKnown RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 HCFC1R1Q9NWW0 138 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 OAZ3Q9UMX2 235 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 SLC4A7Q9Y6M7 1214 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 C8AP07357 584 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 RPL10P27635 214 aaKnown RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 C22orf39Q6P5X5 142 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 TRPV3Q8NET8 790 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 YME1L1Q96TA2 773 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 SEPHS2Q99611 448 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ZFP14Q9HCL3 533 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 PTPRSQ13332 1948 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ABHD14A-ACY1A0A1B0GW23 586 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 LOC730098B7Z3J9 87 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ENO2P09104 434 aaPredicted RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 GNAO1P09471 354 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 CCR2P41597 374 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 SNRPD1P62314 119 aaKnown RBP19.69■□□□□ 0.74
VPS53-201ENST00000291074 PTSQ03393 145 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ARHGEF7Q14155 803 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 SLC5A9Q2M3M2 681 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 MYLK3Q32MK0 819 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 GPR33Q49SQ1 333 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 SLC44A4Q53GD3 710 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 MPP7Q5T2T1 576 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 HID1Q8IV36 788 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 NCSTNQ92542 709 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 LMLNQ96KR4 655 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 ZBP1Q9H171 429 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 CD84Q9UIB8 345 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 NEUROG3Q9Y4Z2 214 aa19.69■□□□□ 0.74
VPS53-201ENST00000291074 HELZP42694 1942 aaKnown RBP19.68■□□□□ 0.74
VPS53-201ENST00000291074 FGF18O76093 207 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 UGT2B4P06133 528 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 GPIP06744 558 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 CCT8P50990 548 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 ROR2Q01974 943 aaKnown RBP19.68■□□□□ 0.74
VPS53-201ENST00000291074 LYPLAL1Q5VWZ2 237 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 CWF19L1Q69YN2 538 aaKnown RBP19.68■□□□□ 0.74
VPS53-201ENST00000291074 SULT1C3Q6IMI6 304 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 TPRG1Q6ZUI0 275 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 DET1Q7L5Y6 550 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 DPP10Q8N608 796 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 CAAP1Q9H8G2 361 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 SMOXQ9NWM0 555 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 ZNHIT2Q9UHR6 403 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 SLCO3A1Q9UIG8 710 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 MYO7AQ13402 2215 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 KRT87PA6NCN2 255 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 K7EPI3 171 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 VILLO15195 856 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 CCL16O15467 120 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms