RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PPP4R1Q8TF05 950 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 DLG3Q92796 817 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 GLMNQ92990 594 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 TRIM55Q9BYV6 548 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 FZD3Q9NPG1 666 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 NUDT4Q9NZJ9 180 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 MUTYHQ9UIF7 546 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 OARD1Q9Y530 152 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 DOCK9Q9BZ29 2069 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 STX16-NPEPL1H3BU86 382 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 STX16O14662 325 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 OXTRP30559 389 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 RPS9P46781 194 aaKnown RBP18.07■□□□□ 0.48
CLN3-254ENST00000637050 ALDH18A1P54886 795 aaKnown RBP18.07■□□□□ 0.48
CLN3-254ENST00000637050 ARL13AQ5H913 290 aaPredicted RBP18.07■□□□□ 0.48
CLN3-254ENST00000637050 RAB44Q7Z6P3 723 aaPredicted RBP18.07■□□□□ 0.48
CLN3-254ENST00000637050 C11orf96Q7Z7L8 435 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 LSMEM2Q8N112 164 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 SPEM1Q8N4L4 309 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 CCDC197Q8NCU1 140 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 FOXJ1Q92949 421 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 TMEM159Q96B96 161 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 THOC1Q96FV9 657 aaKnown RBP18.07■□□□□ 0.48
CLN3-254ENST00000637050 RDH14Q9HBH5 336 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 NPHS2Q9NP85 383 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 CYP8B1Q9UNU6 501 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 DNAJC16Q9Y2G8 782 aa18.07■□□□□ 0.48
CLN3-254ENST00000637050 LIN7AO14910 233 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 POP7O75817 140 aaKnown RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 SNUPNO95149 360 aaKnown RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 C8GP07360 202 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 CHRNGP07510 517 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 CCR10P46092 362 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 PHKG1Q16816 387 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 SYTL3Q4VX76 610 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 UNC50Q53HI1 259 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 CFAP157Q5JU67 520 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 DOK6Q6PKX4 331 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 XKR5Q6UX68 686 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 FRMD7Q6ZUT3 714 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 FRA10AC1Q70Z53 315 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 RASGRP3Q8IV61 690 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 RFWD2Q8NHY2 731 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 PIWIL2Q8TC59 973 aaKnown RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 ASB11Q8WXH4 323 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 ASB2Q96Q27 587 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 APOOQ9BUR5 198 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 C1QTNF3Q9BXJ4 246 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 GSTO2Q9H4Y5 243 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 CD320Q9NPF0 282 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 UTP6Q9NYH9 597 aaKnown RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 WSB2Q9NYS7 404 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 CD274Q9NZQ7 290 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 HAO1Q9UJM8 370 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 PCYT1BQ9Y5K3 369 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 MGAT4DA6NG13 374 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 GFYI3L273 518 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 STK25O00506 426 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 SLC16A5O15375 505 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 FFAR2O15552 330 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 ZNF217O75362 1048 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 SIX3O95343 332 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 MATN4O95460 622 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 HOXC4P09017 264 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 HNRNPA2B1P22626 353 aaKnown RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 PBLDP30039 288 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 CCR5P51681 352 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 GALNT1Q10472 559 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 SP140Q13342 867 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 SETDB1Q15047 1291 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 CRTC3Q6UUV7 619 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 SLC22A15Q8IZD6 547 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 GJD3Q8N144 294 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 LILRA3Q8N6C8 439 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 PDPRQ8NCN5 879 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 OR2L2Q8NH16 312 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 HM13Q8TCT9 377 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 C10orf82Q8WW14 230 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 TOE1Q96GM8 510 aaKnown RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 TRMOQ9BU70 441 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 SLC12A9Q9BXP2 914 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 ILKAPQ9H0C8 392 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 FAM8A1Q9UBU6 413 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 ARL2BPQ9Y2Y0 163 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 RAP2CQ9Y3L5 183 aa18.06■□□□□ 0.48
CLN3-254ENST00000637050 DNMT3AQ9Y6K1 912 aaPredicted RBP18.06■□□□□ 0.48
CLN3-254ENST00000637050 NCF1BA6NI72 391 aaPredicted RBP18.05■□□□□ 0.48
CLN3-254ENST00000637050 NCF1CA8MVU1 366 aaPredicted RBP18.05■□□□□ 0.48
CLN3-254ENST00000637050 SNX2O60749 519 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 APBB3O95704 486 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 ENO2P09104 434 aaPredicted RBP18.05■□□□□ 0.48
CLN3-254ENST00000637050 NCF1P14598 390 aaPredicted RBP18.05■□□□□ 0.48
CLN3-254ENST00000637050 PREPP48147 710 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 ARHGAP8P85298 464 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 LRRTM4Q86VH4 590 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 ZNF781Q8N8C0 355 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 ANKS4BQ8N8V4 417 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 MYOCQ99972 504 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 C6orf106Q9H6K1 298 aaPredicted RBP18.05■□□□□ 0.48
CLN3-254ENST00000637050 COG4Q9H9E3 785 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms