RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 E7ENX8 843 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PGRMC2O15173 223 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CCNFP41002 786 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CDH12P55289 794 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 OGFOD2Q6N063 350 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PRSS55Q6UWB4 352 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 NAPRTQ6XQN6 538 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 POLR3BQ9NW08 1133 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 AQP12BA6NM10 295 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 NRP1O14786 923 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 NOBOXO60393 691 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GGT5P36269 586 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 NSG1P42857 185 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 RGS1Q08116 209 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 PPP1R8Q12972 351 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MADCAM1Q13477 382 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TAF1AQ15573 450 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 CNPY1Q3B7I2 92 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 RBM20Q5T481 1227 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ANO7Q6IWH7 933 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 CES5AQ6NT32 575 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 AQP12AQ8IXF9 295 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ZZZ3Q8IYH5 903 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TMEM199Q8N511 208 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GLB1L3Q8NCI6 653 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 PYCR2Q96C36 320 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 SOHLH2Q9NX45 425 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GULP1Q9UBP9 304 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GLTPD2A6NH11 291 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 FADS2P1A8MWK0 482 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MAGEB17A8MXT2 336 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TYROBPO43914 113 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 UGT1A6P19224 532 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 UGT1A1P22309 533 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 UGT1A4P22310 534 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 UGT1A3P35503 534 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 UGT1A5P35504 534 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MLLT6P55198 1093 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 DLG1Q12959 904 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 SNAPC1Q16533 368 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 DEFB115Q30KQ5 88 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GCNT6Q5T4J0 391 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MSANTD2Q6P1R3 559 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 BEND7Q8N7W2 519 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 RERGQ96A58 199 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 NARS2Q96I59 477 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 WRAP53Q9BUR4 548 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 OSBPL2Q9H1P3 480 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 SEMA3GQ9NS98 782 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 EXD2Q9NVH0 621 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MAT2BQ9NZL9 334 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ITGB1BP2Q9UKP3 347 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ADAMDEC1O15204 470 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 SEPT4O43236 478 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 RAP2AP10114 183 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MYL9P24844 172 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 CDH5P33151 784 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 MERTKQ12866 999 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 PLPP4Q5VZY2 271 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 KRT74Q7RTS7 529 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ZNF554Q86TJ5 538 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TTC29Q8NA56 475 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 KLHL23Q8NBE8 558 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 PPP1R14AQ96A00 147 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 COX4I2Q96KJ9 171 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GPR22Q99680 433 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ABCB9Q9NP78 766 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TMA7Q9Y2S6 64 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 WBP11Q9Y2W2 641 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 SPEF2Q9C093 1822 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TOR1BO14657 336 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 FFAR2O15552 330 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 POP4O95707 220 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 ALOX5P09917 674 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 AZGP1P25311 298 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 RHAGQ02094 409 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 LRRC73Q5JTD7 316 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 CXXC5Q7LFL8 322 aaKnown RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 EZH1Q92800 747 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-212ENST00000616140 KAT2AQ92830 837 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 TXNRD2Q9NNW7 524 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 GKN1Q9NS71 199 aa13.82□□□□□ -0.2
CPSF1-212ENST00000616140 FAM240BA0A1B0GVZ2 78 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 FAM234BA2RU67 622 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 CLDN25C9JDP6 229 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 J3KR12 359 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 AIREO43918 545 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 ADH1CP00326 375 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 DLDP09622 509 aaKnown RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 ZNF132P52740 706 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 CHADLQ6NUI6 762 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 MED27Q6P2C8 311 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 FAM131AQ6UXB0 335 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 FBXO22Q8NEZ5 403 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 EEF1AKMT1Q8WVE0 214 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 GINS4Q9BRT9 223 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D14Q9P2M4 693 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TLR6Q9Y2C9 796 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 STYXL1Q9Y6J8 313 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms