RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ARHGAP24Q8N264 748 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 BEND7Q8N7W2 519 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 PTGR2Q8N8N7 351 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 PDPRQ8NCN5 879 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 OR56A4Q8NGH8 313 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CEP70Q8NHQ1 597 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 MCOLN3Q8TDD5 553 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 EEF1AKMT1Q8WVE0 214 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 NANOS1Q8WY41 292 aaKnown RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 GLMNQ92990 594 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 FAM131CQ96AQ9 280 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 ARRDC3Q96B67 414 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 TMEM159Q96B96 161 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CMTM5Q96DZ9 223 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CHFRQ96EP1 664 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SHDQ96IW2 340 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 HIC2Q96JB3 615 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 RAB3IPQ96QF0 476 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 SMIM14Q96QK8 99 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SORT1Q99523 831 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SLC12A9Q9BXP2 914 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 NUSAP1Q9BXS6 441 aaKnown RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 RASSF4Q9H2L5 321 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 TTYH1Q9H313 450 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 KCNK13Q9HB14 408 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SARS2Q9NP81 518 aaKnown RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 TMEM45AQ9NWC5 275 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CACNA2D2Q9NY47 1150 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CD274Q9NZQ7 290 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SARDHQ9UL12 918 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CDYLQ9Y232 598 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 MED16Q9Y2X0 877 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 NOTCH4Q99466 2003 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 PIEZO1Q92508 2521 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 FFAR2O15552 330 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ITM2AO43736 263 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 GPC4O75487 556 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 CRCPO75575 148 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 DNAJC8O75937 253 aaPredicted RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 CDK14O94921 469 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SLCO2B1O94956 709 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 FSBPO95073 299 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 UNC5CO95185 931 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 TOP3BO95985 862 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 OTCP00480 354 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 CATP04040 527 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 RPN2P04844 631 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ENO1P06733 434 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 HOXC4P09017 264 aaPredicted RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 PRSS56P0CW18 603 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SRFP11831 508 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 HLA-EP13747 358 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 MTHFD2P13995 350 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 HOXB2P14652 356 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 KELP23276 732 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SP100P23497 879 aaPredicted RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 GGT5P36269 586 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 HSD17B2P37059 387 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 PRLHRP49683 370 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 IDH3AP50213 366 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 RPS14P62263 151 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 PRKCQQ04759 706 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 CLCQ05315 142 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ZNF33BQ06732 778 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ACTN3Q08043 901 aaPredicted RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 CNTN1Q12860 1018 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ADGRE1Q14246 886 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 LRRC32Q14392 662 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 GBX1Q14549 363 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 TGFBIQ15582 683 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 OR4D1Q15615 310 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 TSNQ15631 228 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 SMAD2Q15796 467 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 PFKFB4Q16877 469 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SYTL3Q4VX76 610 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 RAET1GQ6H3X3 334 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ZNF852Q6ZMS4 543 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 RNF165Q6ZSG1 346 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 LPCAT2Q7L5N7 544 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 CLNKQ7Z7G1 428 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 MTDHQ86UE4 582 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 CUZD1Q86UP6 607 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SPATA6LQ8N4H0 392 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 HDDC3Q8N4P3 179 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 FITM2Q8N6M3 262 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 TXNDC5Q8NBS9 432 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 FBXO15Q8NCQ5 510 aaPredicted RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 RFWD2Q8NHY2 731 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ACTRT2Q8TDY3 377 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 GANCQ8TET4 914 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 FAM3CQ92520 227 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ELMO1Q92556 727 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SKA1Q96BD8 255 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 PTERQ96BW5 349 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ERP27Q96DN0 273 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 PHF21BQ96EK2 531 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SGF29Q96ES7 293 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 NSL1Q96IY1 281 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 TMEM237Q96Q45 408 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 MMADHCQ9H3L0 296 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms