RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ERRFI1Q9UJM3 462 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 PHTF1Q9UMS5 762 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 OR1A2Q9Y585 309 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 MRPS18BQ9Y676 258 aaKnown RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 HIVEP1P15822 2718 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 A0A0U1RQS6 177 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 GMNCA6NCL1 334 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TCP11X1B4DZS4 312 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TOR1BO14657 336 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 PPP1R12AO14974 1030 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 HTRA2O43464 458 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 NUDT21O43809 227 aaKnown RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 STK10O94804 968 aaKnown RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 FAM107AO95990 144 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 CPP00450 1065 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 GSTA2P09210 222 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 FURINP09958 794 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 CCNB1P14635 433 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 MX2P20592 715 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 GCAP28676 217 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 FDFT1P37268 417 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 SRP54P61011 504 aaKnown RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 DSC2Q02487 901 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 RALGDSQ12967 914 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 SEMA5AQ13591 1074 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ARHGEF7Q14155 803 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 KLHL38Q2WGJ6 581 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 BBS9Q3SYG4 887 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ARMC12Q5T9G4 340 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ANKS6Q68DC2 871 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TIGD7Q6NT04 549 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 DPPA4Q7L190 304 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ANKMY2Q8IV38 441 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 PALM2Q8IXS6 379 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TEX26Q8N6G2 289 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 FBXO36Q8NEA4 188 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 FAM46DQ8NEK8 389 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 CCL4L1Q8NHW4 92 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 STARD8Q92502 1023 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 LRRC39Q96DD0 335 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 PDXPQ96GD0 296 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 SPATA13Q96N96 652 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TSGA13Q96PP4 275 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 SMIM14Q96QK8 99 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 WDR83Q9BRX9 315 aaKnown RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 BRD8Q9H0E9 1235 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ACSS3Q9H6R3 686 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ETNK1Q9HBU6 452 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 INTS9Q9NV88 658 aaKnown RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 SLC39A1Q9NY26 324 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 SENP1Q9P0U3 644 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TEX264Q9Y6I9 313 aa12.34□□□□□ -0.43
SHMT2-230ENST00000557427 ZNF106Q9H2Y7 1883 aaKnown RBP12.34□□□□□ -0.43
SHMT2-230ENST00000557427 TNRC6AQ8NDV7 1962 aaKnown RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 KCNK1O00180 336 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 NDUFAB1O14561 156 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 SOCS5O75159 536 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 PGLSO95336 258 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 PDHA1P08559 390 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 F8A1P23610 371 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 MPSTP25325 297 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 HTR1BP28222 390 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 CD1CP29017 333 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 ELK3P41970 407 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 LIMK2P53671 638 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 CDK16Q00536 496 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 AP1B1Q10567 949 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 ARHGEF18Q6ZSZ5 1173 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 TRABD2AQ86V40 505 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 NLGN4XQ8N0W4 816 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 CYP4X1Q8N118 509 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 BMPERQ8N8U9 685 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 NLGN4YQ8NFZ3 816 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 CCDC110Q8TBZ0 833 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 ZNF473Q8WTR7 871 aaKnown RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 CCT8L2Q96SF2 557 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 DHRS4Q9BTZ2 278 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 POLR1EQ9GZS1 481 aaKnown RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 PPANQ9NQ55 473 aaKnown RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 EIF2B3Q9NR50 452 aaKnown RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 TMEM9Q9P0T7 183 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 PSMC3IPQ9P2W1 217 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 TLK1Q9UKI8 766 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 AKAP9Q99996 3911 aa12.33□□□□□ -0.44
SHMT2-230ENST00000557427 ARHGEF17Q96PE2 2063 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-230ENST00000557427 A0A1W2PQ67 120 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 B4DGG1 531 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 POC1B-GALNT4F8VUJ3 575 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 MKRN2OSH3BPM6 223 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 BANF1O75531 89 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 METTL18O95568 372 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 HLA-DQB2P05538 268 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CYP2A6P11509 494 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 MLNP12872 115 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 BRAFP15056 766 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 GM2AP17900 193 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TCN2P20062 427 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CES1P23141 567 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 ALDH4A1P30038 563 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 SSTR1P30872 391 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms