RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RANBP9Q96S59 729 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 SRPK1Q96SB4 655 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 WWP1Q9H0M0 922 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 GLOD4Q9HC38 313 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 PCMTD2Q9NV79 361 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 SOHLH2Q9NX45 425 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 UBP1Q9NZI7 540 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC24A2Q9UI40 661 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 DNMT3AQ9Y6K1 912 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 C3orf70A6NLC5 250 aaPredicted RBP17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 PMPCBO75439 489 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 SERPING1P05155 500 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 XRCC4Q13426 336 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 LDLRAP1Q5SW96 308 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 GPRC6AQ5T6X5 926 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 FAM151BQ6UXP7 276 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 SYTL1Q8IYJ3 562 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 SPDYE1Q8NFV5 336 aaPredicted RBP17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 OR1L3Q8NH93 324 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 CLIP3Q96DZ5 547 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 BPIFA3Q9BQP9 254 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 ZCCHC2Q9C0B9 1178 aaKnown RBP17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 KIR3DX1Q9H7L2 352 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 IL17CQ9P0M4 197 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 G3BP2Q9UN86 482 aaKnown RBP17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC5A6Q9Y289 635 aa17.34■□□□□ 0.37
CLSTN3-214ENST00000542663 ZGRF1Q86YA3 2104 aa17.33■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC9B1P1A6NJY1 282 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 ZNF487B1APH4 448 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 SPAM1P38567 509 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 NFKBIBQ15653 356 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 PTCHD3Q3KNS1 767 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 C1QL3Q5VWW1 255 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 CCDC70Q6NSX1 233 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 IQCKQ8N0W5 287 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 CISD2Q8N5K1 135 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 NAT14Q8WUY8 206 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 ZFPM2Q8WW38 1151 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 INPP5DQ92835 1189 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 C12orf66Q96MD2 445 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 C5AR2Q9P296 337 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 CTTNBP2NLQ9P2B4 639 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 POMT2Q9UKY4 750 aa17.33■□□□□ 0.36
CLSTN3-214ENST00000542663 A0A0A6YYK5 440 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 LOC285095A0A1B0GVY8 99 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 A0A1W2PQJ5 194 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 LRRD1A4D1F6 860 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 TMEM150CB9EJG8 249 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 POLR2CP19387 275 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 CD68P34810 354 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 CHRNA4P43681 627 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 RRADP55042 308 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 NCF4Q15080 339 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 PDK1Q15118 436 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 PPP2R5EQ16537 467 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 TEX44Q53QW1 395 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 ZRANB3Q5FWF4 1079 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 CRB2Q5IJ48 1285 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 SIRPB2Q5JXA9 342 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 FNBP1LQ5T0N5 605 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 ZFYVE27Q5T4F4 411 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 ZNF385CQ66K41 422 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 ARMC6Q6NXE6 501 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 KDELC1Q6UW63 502 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 TEKT5Q96M29 485 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 C5orf34Q96MH7 638 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 TRABDQ9H4I3 376 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 ACTR5Q9H9F9 607 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 B3GNT3Q9Y2A9 372 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 POLEQ07864 2286 aa17.32■□□□□ 0.36
CLSTN3-214ENST00000542663 GLYATL1P3A0A0U1RQE8 302 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 ANKUB1A6NFN9 424 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 APOL1O14791 398 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 BUD23O43709 281 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 KLF7O75840 302 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 MSL3P1P0C860 447 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 CDH3P22223 829 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 PTPN3P26045 913 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 PBX1P40424 430 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 VWA5B1Q5TIE3 1220 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 ZDHHC20Q5W0Z9 365 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 DET1Q7L5Y6 550 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 LILRA3Q8N6C8 439 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 OR4E2Q8NGC2 313 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 OR2L2Q8NH16 312 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 SGSM3Q96HU1 749 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 RMDN2Q96LZ7 410 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 BARD1Q99728 777 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 NRTNQ99748 197 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 PACSIN1Q9BY11 444 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 NAT10Q9H0A0 1025 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 FANCEQ9HB96 536 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 C1GALT1Q9NS00 363 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 SMOXQ9NWM0 555 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 UVRAGQ9P2Y5 699 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 FAM8A1Q9UBU6 413 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 NTNG1Q9Y2I2 539 aa17.31■□□□□ 0.36
CLSTN3-214ENST00000542663 APCP25054 2843 aa17.3■□□□□ 0.36
CLSTN3-214ENST00000542663 MGAT4DA6NG13 374 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms