RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GRK6P43250 576 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 CLCN7P51798 805 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 LIMK1P53667 647 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 LIMK2P53671 638 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 TMED2Q15363 201 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 SYTL3Q4VX76 610 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 AGAP9Q5VTM2 703 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 UGT3A1Q6NUS8 523 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 XKR5Q6UX68 686 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 LILRA3Q8N6C8 439 aaPredicted RBP16.79■□□□□ 0.28
LIG1-204ENST00000542460 OR4C6Q8NH72 309 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 TMEM159Q96B96 161 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 FAM136AQ96C01 138 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 ELMO2Q96JJ3 720 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 PRDM8Q9NQV8 689 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 KLHL42Q9P2K6 505 aa16.79■□□□□ 0.28
LIG1-204ENST00000542460 MTO1Q9Y2Z2 717 aaKnown RBP16.79■□□□□ 0.28
LIG1-204ENST00000542460 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.78■□□□□ 0.28
LIG1-204ENST00000542460 PDZK1P1A8MUH7 402 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 GPC4O75487 556 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 F3P13726 295 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 CD59P13987 128 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 RPL10P27635 214 aaKnown RBP16.78■□□□□ 0.28
LIG1-204ENST00000542460 ID4P47928 161 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 CDKN2DP55273 166 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 HSPA14Q0VDF9 509 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 PLEKHS1Q5SXH7 462 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 C6orf132Q5T0Z8 1188 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 OGFOD3Q6PK18 319 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 ABRAXAS1Q6UWZ7 409 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 NAPRTQ6XQN6 538 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 ZBTB2Q8N680 514 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 EID2Q8N6I1 236 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 ZDHHC1Q8WTX9 485 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 HNRNPLLQ8WVV9 542 aaKnown RBP16.78■□□□□ 0.28
LIG1-204ENST00000542460 GPR21Q99679 349 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 GPR22Q99680 433 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 GALPQ9UBC7 116 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 ZNF180Q9UJW8 692 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 DHRS7Q9Y394 339 aa16.78■□□□□ 0.28
LIG1-204ENST00000542460 A6NCN8 305 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 OR5K4A6NMS3 321 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 B4DGG1 531 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 TRIM38O00635 465 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 ITGA2BP08514 1039 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 NUDT17P0C025 328 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 SLC2A4P14672 509 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 FDXRP22570 491 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 HALP42357 657 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 SERPINB9P50453 376 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 TIAL1Q01085 375 aaKnown RBP eCLIP16.77■□□□□ 0.28
LIG1-204ENST00000542460 POU4F1Q01851 419 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 SEPT7Q16181 437 aaKnown RBP16.77■□□□□ 0.28
LIG1-204ENST00000542460 TTLL9Q3SXZ7 439 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 ZCCHC8Q6NZY4 707 aaKnown RBP16.77■□□□□ 0.28
LIG1-204ENST00000542460 IYDQ6PHW0 289 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 SIDT2Q8NBJ9 832 aaKnown RBP16.77■□□□□ 0.28
LIG1-204ENST00000542460 SETD7Q8WTS6 366 aaKnown RBP16.77■□□□□ 0.28
LIG1-204ENST00000542460 INPP5DQ92835 1189 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 DHRS4Q9BTZ2 278 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 PPCSQ9HAB8 311 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 SLC24A2Q9UI40 661 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 TRMT6Q9UJA5 497 aaKnown RBP16.77■□□□□ 0.28
LIG1-204ENST00000542460 PSMD13Q9UNM6 376 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 CDYLQ9Y232 598 aa16.77■□□□□ 0.28
LIG1-204ENST00000542460 TP53BP1Q12888 1972 aaPredicted RBP16.77■□□□□ 0.28
LIG1-204ENST00000542460 SIGLEC6O43699 453 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 KRT38O76015 456 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 SLCO2B1O94956 709 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 EML2O95834 649 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 SHBGP04278 402 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 SLC35G4P0C7Q5 338 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 BRAFP15056 766 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 SAT1P21673 171 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 PDHA2P29803 388 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 PREPP48147 710 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 SLC12A2P55011 1212 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 PDAP1Q13442 181 aaKnown RBP16.76■□□□□ 0.27
LIG1-204ENST00000542460 USP10Q14694 798 aaKnown RBP16.76■□□□□ 0.27
LIG1-204ENST00000542460 LGSNQ5TDP6 509 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 ADGRD1Q6QNK2 874 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 TAOK1Q7L7X3 1001 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 CNPY4Q8N129 248 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 NAGSQ8N159 534 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 FAM181AQ8N9Y4 354 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 ACVR1CQ8NER5 493 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 CD200R1Q8TD46 325 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 RHBDD1Q8TEB9 315 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 DCAKDQ8WVC6 231 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 GLMNQ92990 594 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 OLFM1Q99784 485 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 WWP1Q9H0M0 922 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 OR52A5Q9H2C5 316 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 SLC39A10Q9ULF5 831 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 BTBD3Q9Y2F9 522 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 WDR37Q9Y2I8 494 aa16.76■□□□□ 0.27
LIG1-204ENST00000542460 KIR2DS5A0A0G2JLQ3 304 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 A0A0G2JNG1 304 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 KIR2DS3K7RE56 304 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 CNTFP26441 200 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms