RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 LDB1Q86U70 411 aaPredicted RBP12.69□□□□□ -0.38
VPS28-216ENST00000533806 OR10G6Q8NH81 332 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 ZFPM2Q8WW38 1151 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS28-216ENST00000533806 TMEM159Q96B96 161 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 CXorf40BQ96DE9 158 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 RMDN2Q96LZ7 410 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 COG4Q9H9E3 785 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 ASIC3Q9UHC3 531 aa12.69□□□□□ -0.38
VPS28-216ENST00000533806 UNC13CQ8NB66 2214 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 SRRM3A6NNA2 597 aaPredicted RBP12.68□□□□□ -0.38
VPS28-216ENST00000533806 CDRT15L2A8MXV6 281 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 BHMG1C9JSJ3 638 aaPredicted RBP12.68□□□□□ -0.38
VPS28-216ENST00000533806 PLD2O14939 933 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 HGSO14964 777 aaPredicted RBP12.68□□□□□ -0.38
VPS28-216ENST00000533806 TLX3O43711 291 aaPredicted RBP12.68□□□□□ -0.38
VPS28-216ENST00000533806 DUX1O43812 170 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 C9P02748 559 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 FTH1P02794 183 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 POLBP06746 335 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 ACADLP28330 430 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 MLLT3P42568 568 aaPredicted RBP12.68□□□□□ -0.38
VPS28-216ENST00000533806 CD151P48509 253 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 TTPAP49638 278 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 ERVPABLB-1P60509 514 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 TBC1D25Q3MII6 688 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 MAP9Q49MG5 647 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 MSS51Q4VC12 460 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 C3orf38Q5JPI3 329 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 IZUMO3Q5VZ72 239 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 RAB11FIP2Q7L804 512 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 ARHGAP22Q7Z5H3 698 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 TRIM48Q8IWZ4 208 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 LSMEM2Q8N112 164 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 CCDC74BQ96LY2 380 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 BIRC8Q96P09 236 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 TCF12Q99081 682 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 TTC1Q99614 292 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 TRIM51Q9BSJ1 452 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 CARD6Q9BX69 1037 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 STRADBQ9C0K7 418 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 RAB33BQ9H082 229 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 VPS37BQ9H9H4 285 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 PLAC1Q9HBJ0 212 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 EPB41L5Q9HCM4 733 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 EPHA6Q9UF33 1036 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 CDYLQ9Y232 598 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 AK5Q9Y6K8 562 aa12.68□□□□□ -0.38
VPS28-216ENST00000533806 ACACAQ13085 2346 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 MN1Q10571 1320 aaPredicted RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 GOLGA8KD6RF30 607 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 GOLGA8TH3BQL2 631 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 SMAPO00193 183 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 PRMT5O14744 637 aaPredicted RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 LIN7AO14910 233 aaPredicted RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 GPC4O75487 556 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 USP1O94782 785 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 UBXN7O94888 489 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 SEC31AO94979 1220 aaKnown RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 SLC35G4P0C7Q5 338 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 OR56A5P0C7T3 313 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 RPS3P23396 243 aaKnown RBP eCLIP12.67□□□□□ -0.385e-7■■□□□ 13
VPS28-216ENST00000533806 CCR7P32248 378 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 PPARGP37231 505 aaPredicted RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 ADARP55265 1226 aaKnown RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 MORF4L2Q15014 288 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 NEPROQ6NW34 567 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 CENPUQ71F23 418 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 CLEC14AQ86T13 490 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 CILP2Q8IUL8 1156 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 IGDCC3Q8IVU1 814 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 SNIP1Q8TAD8 396 aaKnown RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 LKAAEAR1Q8TD35 194 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 NCSTNQ92542 709 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 LPGAT1Q92604 370 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 C12orf66Q96MD2 445 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 ZNF578Q96N58 590 aaPredicted RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 KRT12Q99456 494 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 WDR83Q9BRX9 315 aaKnown RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 TWSG1Q9GZX9 223 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 KIR3DX1Q9H7L2 352 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 IMP3Q9NV31 184 aaKnown RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 SEMA5BQ9P283 1151 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 FAM8A1Q9UBU6 413 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 ANAPC5Q9UJX4 755 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 RAXQ9Y2V3 346 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 CFAP20Q9Y6A4 193 aaKnown RBP12.67□□□□□ -0.38
VPS28-216ENST00000533806 RPS6KL1Q9Y6S9 549 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 FAM169AQ9Y6X4 670 aa12.67□□□□□ -0.38
VPS28-216ENST00000533806 A0A087WV48 116 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 IQCF5A8MTL0 148 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 S1PR4O95977 384 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 ITGA2BP08514 1039 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 ANKRD34CP0C6C1 535 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 HGFP14210 728 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 TYRP1P17643 537 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 OGNP20774 298 aaKnown RBP12.66□□□□□ -0.38
VPS28-216ENST00000533806 MPSTP25325 297 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 AOAHP28039 575 aa12.66□□□□□ -0.38
VPS28-216ENST00000533806 CAPZBP47756 277 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms