RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	WDR37	Q9Y2I8	494 aa		12.13	□□□□□ -0.47
CAPN1-223	ENST00000533079	TMCO5B	A8MYB1	307 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	LRRTM2	O43300	516 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	HLA-DQB2	P05538	268 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	CAPN1	P07384	714 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	CD63	P08962	238 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	GZMA	P12544	262 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	PTGER4	P35408	488 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	PIGH	Q14442	188 aa	Predicted RBP	12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	KRT81	Q14533	505 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	RPE65	Q16518	533 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	KYNU	Q16719	465 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZXDC	Q2QGD7	858 aa	Predicted RBP	12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	CCDC122	Q5T0U0	273 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	CERS6	Q6ZMG9	384 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	MRGPRE	Q86SM8	312 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZC3H18	Q86VM9	953 aa	Known RBP	12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	REXO1L1P	Q8IX06	675 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	C17orf53	Q8N3J3	647 aa	Predicted RBP	12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZADH2	Q8N4Q0	377 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	NIPA2	Q8N8Q9	360 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	FAM71B	Q8TC56	605 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZNF653	Q96CK0	615 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	EID2B	Q96D98	161 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	TTC25	Q96NG3	672 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	AGAP3	Q96P47	875 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	PCMTD2	Q9NV79	361 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	HRASLS2	Q9NWW9	162 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	DTL	Q9NZJ0	730 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	PPP2R2C	Q9Y2T4	447 aa		12.12	□□□□□ -0.47
CAPN1-223	ENST00000533079	KLHL33	A6NCF5	533 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	HBQ1	P09105	142 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	CCDC175	P0C221	793 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	MTHFD1	P11586	935 aa	Known RBP	12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	EDN3	P14138	238 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	MX2	P20592	715 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	CYP2A7	P20853	494 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	CD86	P42081	329 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	SOX8	P57073	446 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	SLC25A11	Q02978	314 aa	Known RBP	12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	NIPAL4	Q0D2K0	466 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	ABR	Q12979	859 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	RAPSN	Q13702	412 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	GALNT3	Q14435	633 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	DCAF10	Q5QP82	559 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	NCBP2-AS2	Q69YL0	99 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	ARMC6	Q6NXE6	501 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	GDF7	Q7Z4P5	450 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	IRF2BP2	Q7Z5L9	587 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	TMC3	Q7Z5M5	1100 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	AMZ2	Q86W34	360 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	GALNT16	Q8N428	558 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	DTX3L	Q8TDB6	740 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	INPP5D	Q92835	1189 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	HDAC11	Q96DB2	347 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZNF711	Q9Y462	761 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	EPN1	Q9Y6I3	576 aa	Predicted RBP	12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	CROCC	Q5TZA2	2017 aa		12.11	□□□□□ -0.47
CAPN1-223	ENST00000533079	PDZD2	O15018	2839 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	PCSK5	Q92824	1860 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	C2CD3	Q4AC94	2353 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079		A0A1B0GUH1	482 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	PRSS44	E7EML9	344 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	PEX12	O00623	359 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	E2F3	O00716	465 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	MAP3K7	O43318	606 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	MTX2	O75431	263 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	FTL	P02792	175 aa	Predicted RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	MMP2	P08253	660 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	TCF4	P15884	667 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	BPI	P17213	487 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	AGXT	P21549	392 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	TMEM115	Q12893	351 aa	Predicted RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	XRCC4	Q13426	336 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	SSPN	Q14714	243 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	SLC14A2	Q15849	920 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	KHDC1	Q4VXA5	237 aa	Known RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZNF789	Q5FWF6	425 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZDHHC20	Q5W0Z9	365 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	LCN10	Q6JVE6	187 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	RAD9B	Q6WBX8	426 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	BEND7	Q8N7W2	519 aa	Predicted RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	PPP4R1	Q8TF05	950 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	TRIB3	Q96RU7	358 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	WDR77	Q9BQA1	342 aa	Predicted RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZNF670	Q9BS34	389 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	TLR10	Q9BXR5	811 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	GPR63	Q9BZJ6	419 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	SLC7A5P2	Q9GIP4	190 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	ZNF552	Q9H707	407 aa	Predicted RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	KIR3DX1	Q9H7L2	352 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	C1GALT1	Q9NS00	363 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	IMP3	Q9NV31	184 aa	Known RBP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	AIPL1	Q9NZN9	384 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	TRIM10	Q9UDY6	481 aa		12.1	□□□□□ -0.47
CAPN1-223	ENST00000533079	NTNG1	Q9Y2I2	539 aa		12.1	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms