RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 C6orf136Q5SQH8 315 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ANKRD20A1Q5TYW2 823 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ANKRD20A3Q5VUR7 823 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 MOXD1Q6UVY6 613 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ZBTB49Q6ZSB9 765 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 C11orf57Q6ZUT1 292 aaPredicted RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 RUFY3Q7L099 469 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 DET1Q7L5Y6 550 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 PATL1Q86TB9 770 aaKnown RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 HOOK3Q86VS8 718 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 TMEM173Q86WV6 379 aaPredicted RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 PALB2Q86YC2 1186 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 SPATA2LQ8IUW3 424 aaPredicted RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 MAML2Q8IZL2 1156 aaPredicted RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 SYCP3Q8IZU3 236 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 LRRC43Q8N309 656 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ATAD1Q8NBU5 361 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 INPP5DQ92835 1189 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 APBB2Q92870 758 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ATP6V0A1Q93050 837 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 BICD1Q96G01 975 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 HES6Q96HZ4 224 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 RBM14Q96PK6 669 aaKnown RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 INTS14Q96SY0 518 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 SH3GL2Q99962 352 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 NTPCRQ9BSD7 190 aaKnown RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 TMEM79Q9BSE2 394 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 PI4K2AQ9BTU6 479 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ABHD6Q9BV23 337 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 MLPHQ9BV36 600 aaPredicted RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 CAPS2Q9BXY5 557 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 RAD21L1Q9H4I0 556 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 KLHL31Q9H511 634 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ESRP2Q9H6T0 727 aaKnown RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 IL1RAPL2Q9NP60 686 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 TCP11L1Q9NUJ3 509 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 ABCB8Q9NUT2 735 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 SLC9A2Q9UBY0 812 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 MOSPD1Q9UJG1 213 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 TRAF3IP3Q9Y228 551 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 MTF2Q9Y483 593 aaPredicted RBP3.24□□□□□ -1.89
CD44-229ENST00000528672 AKNAQ7Z591 1439 aa3.24□□□□□ -1.89
CD44-229ENST00000528672 A0A087WV48 116 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 DNAJC9-AS1A6NH13 148 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 LACTBL1A8MY62 500 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 KDM4EB2RXH2 506 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 CLIC2O15247 247 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 NDUFS4O43181 175 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 PLPP2O43688 288 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 CREG1O75629 220 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 SLC22A3O75751 556 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 CAMTA2O94983 1202 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 NDUFB8O95169 186 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 GUCA1CO95843 209 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 PNPP00491 289 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 EGFP01133 1207 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 FERP16591 822 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 EEF1B2P24534 225 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 TMOD1P28289 359 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 PIGAP37287 484 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 USP8P40818 1118 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 EIF2S3P41091 472 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 CRKLP46109 303 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 ME1P48163 572 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 COMPP49747 757 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 GSCP56915 257 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 IRX1P78414 480 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 ADORA2A-AS1P86434 159 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 AKAP17AQ02040 695 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 GHRHRQ02643 423 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ACTN3Q08043 901 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 MZT1Q08AG7 82 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ACSM1Q08AH1 577 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ST3GAL1Q11201 340 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 MAD2L1Q13257 205 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 PDIA5Q14554 519 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 MEP1AQ16819 746 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 VWC2Q2TAL6 325 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 EIF2S3LQ2VIR3 472 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 MYLK3Q32MK0 819 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 LEXMQ3ZCV2 418 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 DCST1Q5T197 706 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 NSUN5P2Q63ZY6 315 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 TTC19Q6DKK2 380 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 PAPD4Q6PIY7 484 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 CNSTQ6PJW8 725 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 GBP6Q6ZN66 633 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 TPRG1Q6ZUI0 275 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 CCDC80Q76M96 950 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ZER1Q7Z7L7 766 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 TMEM110Q86TL2 294 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 DZIP1Q86YF9 867 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 TIGD4Q8IY51 512 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 PEX5LQ8IYB4 626 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ZNF595Q8IYB9 648 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 TBC1D21Q8IYX1 336 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 NHLRC2Q8NBF2 726 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 SLC44A5Q8NCS7 719 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ZNF540Q8NDQ6 660 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 IPMKQ8NFU5 416 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms