RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ULK4Q96C45 1275 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 IP6K3Q96PC2 410 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 PSMG3-AS1Q96PY0 264 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 FCRL5Q96RD9 977 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 PACSIN1Q9BY11 444 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 KIR3DX1Q9H7L2 352 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 RSPH14Q9UHP6 348 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 SERTAD3Q9UJW9 196 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 INTUQ9ULD6 942 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 SYCE3A1L190 88 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 OR6C74A6NCV1 312 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 IFRD1O00458 451 aaPredicted RBP20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 AURKAO14965 403 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 PSTPIP1O43586 416 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 CST8O60676 142 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 PRAMEF1O95521 474 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 PTMSP20962 102 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 AGXTP21549 392 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 KCNAB1Q14722 419 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 TFDP3Q5H9I0 405 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 CCDC181Q5TID7 509 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 CPNE8Q86YQ8 564 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 CCDC50Q8IVM0 306 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 GPR150Q8NGU9 434 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 SSC4DQ8WTU2 575 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 NLNQ9BYT8 704 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 WWP1Q9H0M0 922 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 LUC7LQ9NQ29 371 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 C1GALT1Q9NS00 363 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 MAP10Q9P2G4 905 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 SLC24A2Q9UI40 661 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 BTRCQ9Y297 605 aa20.52■□□□□ 0.88
SQSTM1-210ENST00000506042 C3orf70A6NLC5 250 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 TIAF1O95411 115 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 CRTAMO95727 393 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 KAZNQ674X7 775 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 TMEM135Q86UB9 458 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 GPR135Q8IZ08 494 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 ACVR1CQ8NER5 493 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 RNF31Q96EP0 1072 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 RBM41Q96IZ5 413 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 DNAJC7Q99615 494 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 SRMSQ9H3Y6 488 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 CRLS1Q9UJA2 301 aa20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 AAR2Q9Y312 384 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-210ENST00000506042 C5orf60A6NFR6 353 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 MEN1O00255 615 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 KDM1AO60341 852 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A9O60656 530 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 TMEM63AO94886 807 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 ZRANB2O95218 330 aaKnown RBP eCLIP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 DDAH2O95865 285 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 ALPPP05187 535 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A6P19224 532 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A1P22309 533 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A4P22310 534 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 HADHAP40939 763 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 PAPD7Q5XG87 772 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 CAPRIN2Q6IMN6 1127 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 FAM199XQ6PEV8 388 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 ZC3H18Q86VM9 953 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 HM13Q8TCT9 377 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 LCN9Q8WX39 176 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 HAUS1Q96CS2 278 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 ZNF501Q96CX3 271 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 SGSM3Q96HU1 749 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 ASB8Q9H765 288 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 ACTR5Q9H9F9 607 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A7Q9HAW7 530 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A10Q9HAW8 530 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 UGT1A8Q9HAW9 530 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 GPR83Q9NYM4 423 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 TMPRSS11EQ9UL52 423 aa20.5■□□□□ 0.87
SQSTM1-210ENST00000506042 GSAPA4D1B5 854 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 DNAJB5O75953 348 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 MSL3P1P0C860 447 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 ITGALP20701 1170 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 CTNNA2P26232 953 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 CETN2P41208 172 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 PREPP48147 710 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 VAV2P52735 878 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 CTSCP53634 463 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 TAF1AQ15573 450 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 GPR19Q15760 415 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 BCL7AQ4VC05 210 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 KDELC1Q6UW63 502 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 MFSD7Q6UXD7 560 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 DET1Q7L5Y6 550 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 RCOR2Q8IZ40 523 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 TM9SF4Q92544 642 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 LINC00615Q96LM1 132 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 C19orf43Q9BQ61 176 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 DHRS4Q9BTZ2 278 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 TRIM55Q9BYV6 548 aa20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 PLEKHB1Q9UF11 243 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 CFAP20Q9Y6A4 193 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-210ENST00000506042 K7EM74 188 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 GSTM1P09488 218 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 GNLYP22749 145 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 CDKN2BP42772 138 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms