RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PDE1BQ01064 536 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 TUBB3Q13509 450 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 SPARCL1Q14515 664 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 KCTD11Q693B1 232 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 KLHL35Q6PF15 583 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 CERS6Q6ZMG9 384 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 ATG14Q6ZNE5 492 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 PPP1R3BQ86XI6 285 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 TMEM139Q8IV31 216 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 NXPE1Q8N323 547 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 UBXN4Q92575 508 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 STAMBPL1Q96FJ0 436 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 RMDN2Q96LZ7 410 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 C12orf66Q96MD2 445 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 MAP3K3Q99759 626 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 C19orf43Q9BQ61 176 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 SLC24A2Q9UI40 661 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 LNPEPQ9UIQ6 1025 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 ACSL5Q9ULC5 683 aa18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 USP9XQ93008 2570 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-206ENST00000473405 A0A0U1RQJ8 604 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 KLHL33A6NCF5 533 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 TLCD2A6NGC4 264 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 SLC35G4P0C7Q5 338 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 EBLN1P0CF75 366 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 DLSTP36957 453 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 PRLHRP49683 370 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 TMPRSS15P98073 1019 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 MC1RQ01726 317 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 KLF1Q13351 362 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 PPP1R2P1Q96PQ5 205 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 FAM96AQ9H5X1 160 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 KIR3DX1Q9H7L2 352 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 CRLS1Q9UJA2 301 aa18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 PACSIN2Q9UNF0 486 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-206ENST00000473405 IGLV3-16A0A075B6K0 115 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 FURINP09958 794 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 TCN2P20062 427 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 ITGALP20701 1170 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 CSRP3P50461 194 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 KCNC4Q03721 635 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 DEFB109BQ30KR1 87 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 ZNF658BQ4V348 819 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 DNTTIP2Q5QJE6 756 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 CAPRIN2Q6IMN6 1127 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 PWWP2BQ6NUJ5 590 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 C16orf46Q6P387 395 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 SNX20Q7Z614 316 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 FAM71DQ8N9W8 422 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 SIDT2Q8NBJ9 832 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 HM13Q8TCT9 377 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 APOBEC4Q8WW27 367 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 ZFPM2Q8WW38 1151 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 ULK4Q96C45 1275 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 DNAJC1Q96KC8 554 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 CD180Q99467 661 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 COPS8Q99627 209 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 HRASLS2Q9NWW9 162 aa18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 FEZ2Q9UHY8 353 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 R3HDM2Q9Y2K5 976 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-206ENST00000473405 NAV2Q8IVL1 2488 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 TRBV5-4A0A0C4DH59 114 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 METTL18O95568 372 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 MC4RP32245 332 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 HADHAP40939 763 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 CETN2P41208 172 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 CDKN1CP49918 316 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 GDF10P55107 478 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 CYB5D1Q6P9G0 228 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 ARHGEF18Q6ZSZ5 1173 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 PEX26Q7Z412 305 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 OOSP2Q86WS3 158 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 PTRH1Q86Y79 214 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 KMT5CQ86Y97 462 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 CT55Q8WUE5 264 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 DCUN1D1Q96GG9 259 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 BAG1Q99933 345 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 PDE7BQ9NP56 450 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 AMFRQ9UKV5 643 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 RARRES3Q9UL19 164 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 PCDHGA6Q9Y5G7 932 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 SPTBP11277 2137 aa18.32■□□□□ 0.52
CCDC88B-206ENST00000473405 TCRBV7S2A1N4TA0A589 114 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 OR6C74A6NCV1 312 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 H7C0S8 307 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 DDX3YO15523 660 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 ZNF189O75820 626 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 FTCDO95954 541 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 POLBP06746 335 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 PRSS56P0CW18 603 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 RALBP11234 206 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 ATP1B2P14415 290 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 ACRV1P26436 265 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 KPNA2P52292 529 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 PARP6Q2NL67 630 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 GPR33Q49SQ1 333 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 KIAA1328Q86T90 577 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 CFAP206Q8IYR0 622 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 D2HGDHQ8N465 521 aa18.31■□□□□ 0.52
CCDC88B-206ENST00000473405 C9orf43Q8TAL5 461 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms