RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ZNF208O43345 1280 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 UGT2B10P36537 528 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 CSTF1Q05048 431 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF773Q6PK81 442 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 MOB2Q70IA6 237 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 DENND1CQ8IV53 801 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 CIPCQ9C0C6 399 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 KCNMB3Q9NPA1 279 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF490Q9ULM2 529 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 COLEC10Q9Y6Z7 277 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 NRCAMQ92823 1304 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ARFGEF2Q9Y6D5 1785 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TEX13CA0A0J9YWL9 993 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 EIF1AYO14602 144 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 GRID2O43424 1007 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TPH1P17752 444 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 EIF1AXP47813 144 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 RPP38P78345 283 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TEX44Q53QW1 395 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 CDKL4Q5MAI5 379 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 LPCAT4Q643R3 524 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 GALNT12Q8IXK2 581 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 PCDH19Q8TAB3 1148 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF668Q96K58 619 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 MFSD14AQ96MC6 490 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ASCC3Q8N3C0 2202 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 DCDC2CA8MYV0 355 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TMEM62Q0P6H9 643 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SEMA3AQ14563 771 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 MPPE1Q53F39 396 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 IFI44LQ53G44 452 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 IQSEC1Q6DN90 963 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 CXorf57Q6NSI4 855 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 IRF2BP2Q7Z5L9 587 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TOMM5Q8N4H5 51 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 OR2L3Q8NG85 312 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 USP17L7P0C7H9 530 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 DNASE1L1P49184 302 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 FAPQ12884 760 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 KHDC1Q4VXA5 237 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SLC9B1Q4ZJI4 515 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ALDH16A1Q8IZ83 802 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ATXN3LQ9H3M9 355 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TRAV19A0A0A6YYK7 116 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SMSP52788 366 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 HSPA14Q0VDF9 509 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 TAF1CQ15572 869 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 S100A16Q96FQ6 103 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SPATA9Q9BWV2 254 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZFP57Q9NU63 452 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 LYARQ9NX58 379 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 DUXAA6NLW8 204 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 GMFGO60234 142 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 RXRBP28702 533 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 FCGRTP55899 365 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF404Q494X3 552 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 CRTC2Q53ET0 693 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 PDSS2Q86YH6 399 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 OR14K1Q8NGZ2 314 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF350Q9GZX5 532 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 OR6C70A6NIJ9 312 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SLC19A2O60779 497 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ABCB7O75027 752 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 UBXN7O94888 489 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SLC35G4P0C7Q5 338 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ERVK-8P63133 956 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 RFTN1Q14699 578 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 DLG2Q15700 870 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 XKR4Q5GH76 650 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 FAM91A1Q658Y4 838 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 SPPL2CQ8IUH8 684 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 ZDHHC21Q8IVQ6 265 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 MTMR9Q96QG7 549 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 FNIP2Q9P278 1114 aa13.14□□□□□ -0.31
COL6A3-209ENST00000472056 REXO2Q9Y3B8 237 aaKnown RBP13.14□□□□□ -0.31
COL6A3-209ENST00000472056 M0R036 132 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 DNM1LO00429 736 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 SLITRK5O94991 958 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 MTHFD1P11586 935 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ANXA3P12429 323 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 GNALP38405 381 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 TSPAN5P62079 268 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 GK3PQ14409 553 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 TPRG1LQ5T0D9 272 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 HID1Q8IV36 788 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 KCTD4Q8WVF5 259 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ASB15Q8WXK1 588 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 MARK4Q96L34 752 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 METTL8Q9H825 291 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 FOLH1BQ9HBA9 442 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 PPIEQ9UNP9 301 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ABHD14A-ACY1A0A1B0GW23 586 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 DNAJB6O75190 326 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 GARNL3Q5VVW2 1013 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF227Q86WZ6 799 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 LGI2Q8N0V4 545 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 SPERTQ8NA61 448 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 HDAC10Q969S8 669 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 PPM1MQ96MI6 270 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF471Q9BX82 626 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms