RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ZNF7P17097 686 aaPredicted RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 IL10P22301 178 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 HSPA13P48723 471 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 RPL38P63173 70 aaKnown RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 TXNL4AP83876 142 aaKnown RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 PRKG2Q13237 762 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 APOFQ13790 326 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 TRIM60Q495X7 471 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 DET1Q7L5Y6 550 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 KRTCAP2Q8N6L1 136 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 ANKFN1Q8N957 763 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 HJURPQ8NCD3 748 aaPredicted RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 NCSTNQ92542 709 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 TRMT2BQ96GJ1 504 aaKnown RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 MPP4Q96JB8 637 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 NUSAP1Q9BXS6 441 aaKnown RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 A0A1W2PRU2 124 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 TCRBV5S2A0A599 114 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 EI24O14681 340 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 ACOX3O15254 700 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 ZXDCQ2QGD7 858 aaPredicted RBP18.77■□□□□ 0.6
VIM-203ENST00000469543 Q6ZNB5 142 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 SLAIN1Q8ND83 568 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 BIRC7Q96CA5 298 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 RNF145Q96MT1 663 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 IKZF5Q9H5V7 419 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 OCEL1Q9H607 264 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 HACD3Q9P035 362 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 CRLS1Q9UJA2 301 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 CCL26Q9Y258 94 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 GLYATL1P3A0A0U1RQE8 302 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 AQP12BA6NM10 295 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 MTX2O75431 263 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 CXCL10P02778 98 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 FASP25445 335 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 CCT8P50990 548 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 EPHB3P54753 998 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 ARHGEF7Q14155 803 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 PABPC1LQ4VXU2 614 aaKnown RBP18.77■□□□□ 0.59
VIM-203ENST00000469543 AQP12AQ8IXF9 295 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 DCAF4L2Q8NA75 395 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 MAGEE2Q8TD90 523 aaPredicted RBP18.77■□□□□ 0.59
VIM-203ENST00000469543 CCT7Q99832 543 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 MRPS26Q9BYN8 205 aaKnown RBP18.77■□□□□ 0.59
VIM-203ENST00000469543 TRIM54Q9BYV2 358 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 RBM38Q9H0Z9 239 aaKnown RBP18.77■□□□□ 0.59
VIM-203ENST00000469543 VAPAQ9P0L0 249 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 FAM8A1Q9UBU6 413 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 KLQ9UEF7 1012 aa18.77■□□□□ 0.59
VIM-203ENST00000469543 LEF1Q9UJU2 399 aaPredicted RBP18.77■□□□□ 0.59
VIM-203ENST00000469543 LOC730098B7Z3J9 87 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 ANKRD28O15084 1053 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 H6PDO95479 791 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 INPP5AQ14642 412 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 PRMT9Q6P2P2 845 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 ZFAND4Q86XD8 727 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 FAM86B1Q8N7N1 296 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 TRPV3Q8NET8 790 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.76■□□□□ 0.59
VIM-203ENST00000469543 PYCR2Q96C36 320 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 C2orf49Q9BVC5 232 aaPredicted RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 RIC8BQ9NVN3 520 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 NUDT4Q9NZJ9 180 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 PTBP2Q9UKA9 531 aaKnown RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 CHD9Q3L8U1 2897 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 SMIM31A0A1B0GVY4 71 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 TYW5A2RUC4 315 aaKnown RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 GFRA2O00451 464 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 HNRNPRO43390 633 aaKnown RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 DFNA5O60443 496 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 ACRV1P26436 265 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 HMOX2P30519 316 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 PPP1R8Q12972 351 aaKnown RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 PCBP2Q15366 365 aaKnown RBP eCLIP18.76■□□□□ 0.59
VIM-203ENST00000469543 OTUD3Q5T2D3 398 aaPredicted RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 TPGS2Q68CL5 300 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 CHST15Q7LFX5 561 aaPredicted RBP18.76■□□□□ 0.59
VIM-203ENST00000469543 SNX20Q7Z614 316 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 FIBCD1Q8N539 461 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 TRIML2Q8N7C3 387 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 CYGBQ8WWM9 190 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 SLCO3A1Q9UIG8 710 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 UTS2RQ9UKP6 389 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 CCL27Q9Y4X3 112 aa18.76■□□□□ 0.59
VIM-203ENST00000469543 FAM234BA2RU67 622 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 NEK2P51955 445 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 BNIP2Q12982 314 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 LSAMPQ13449 338 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 RAB33AQ14088 237 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 CPSF6Q16630 551 aaKnown RBP eCLIP18.75■□□□□ 0.59
VIM-203ENST00000469543 PDCD4Q53EL6 469 aaKnown RBP18.75■□□□□ 0.59
VIM-203ENST00000469543 GPRC6AQ5T6X5 926 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 RETSATQ6NUM9 610 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 ADAMTSL2Q86TH1 951 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 SLC39A11Q8N1S5 342 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 STK40Q8N2I9 435 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 DTWD1Q8N5C7 304 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 RNF208Q9H0X6 261 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 RETREG1Q9H6L5 497 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 SLC6A13Q9NSD5 602 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms