RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF470Q6ECI4 717 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 OGFOD3Q6PK18 319 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 MARK2Q7KZI7 788 aaKnown RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 GKN2Q86XP6 184 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 LMNTD2Q8IXW0 634 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 RIBC1Q8N443 379 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 PPM1NQ8N819 430 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 OR2W6PQ8NHA6 318 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 SCG3Q8WXD2 468 aaKnown RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 OR1E3Q8WZA6 343 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 HDAC10Q969S8 669 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 WDR92Q96MX6 357 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 PAFAH2Q99487 392 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 C19orf43Q9BQ61 176 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 BPIFA1Q9NP55 256 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 MRPL40Q9NQ50 206 aaKnown RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 CATSPERZQ9NTU4 200 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF446Q9NWS9 450 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 IL1RAPL1Q9NZN1 696 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 IL17CQ9P0M4 197 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 PSMC3IPQ9P2W1 217 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-208ENST00000437607 KLQ9UEF7 1012 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 PISDQ9UG56 409 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 FKBPLQ9UIM3 349 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 APPL1Q9UKG1 709 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 DGKBQ9Y6T7 804 aa11.98□□□□□ -0.49
PTPRF-208ENST00000437607 A0A0U1RQS6 177 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 TMX2-CTNND1H3BSU7 103 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 AGRPO00253 132 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 RASGRF2O14827 1237 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 NVLO15381 856 aaKnown RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 SASH3O75995 380 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 PRAMEF1O95521 474 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 GOT2P00505 430 aaKnown RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 PCCBP05166 539 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ERVK-10P10266 1014 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 LIPCP11150 499 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ITGB6P18564 788 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 WT1P19544 449 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ARNTP27540 789 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 HTR1BP28222 390 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 MC4RP32245 332 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 MSH2P43246 934 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ARSDP51689 593 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 DCDC1P59894 354 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 KCNC4Q03721 635 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF844Q08AG5 666 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 NFATC3Q12968 1075 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ACOX1Q15067 660 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 HSP90AA5PQ58FG0 334 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 ZRANB3Q5FWF4 1079 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 MRNIPQ6NTE8 343 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 CYS1Q717R9 158 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 LRRC6Q86X45 466 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 SLITRK4Q8IW52 837 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 UNC5BQ8IZJ1 945 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 PELI3Q8N2H9 469 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 Q8N9G6 341 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 OR6C4Q8NGE1 309 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 EPS8L3Q8TE67 593 aaKnown RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 EXTL1Q92935 676 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 MRRFQ96E11 262 aaKnown RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 SGF29Q96ES7 293 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 STRADBQ9C0K7 418 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 CDH19Q9H159 772 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 FGF22Q9HCT0 170 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 IARS2Q9NSE4 1012 aaKnown RBP11.97□□□□□ -0.49
PTPRF-208ENST00000437607 MOCS1Q9NZB8 636 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 FETUBQ9UGM5 382 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 SLC24A2Q9UI40 661 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 LOXL2Q9Y4K0 774 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 SLC30A1Q9Y6M5 507 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 RNF215Q9Y6U7 377 aa11.97□□□□□ -0.49
PTPRF-208ENST00000437607 PRAMEF33A0A0G2JMD5 474 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 GLYATL1P3A0A0U1RQE8 302 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CCDC162PA2VCL2 907 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 OR51F1A6NGY5 319 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 C9orf172C9J069 976 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 GOLGA8KD6RF30 607 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 GOLGA8TH3BQL2 631 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 H7C0S8 307 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 MAP2K7O14733 419 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 PFDN6O15212 129 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 PRAMEF10O60809 474 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 CDH16O75309 829 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 TNFP01375 233 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 MYZAPP0CAP1 466 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 BPIP17213 487 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 OGNP20774 298 aaKnown RBP11.96□□□□□ -0.49
PTPRF-208ENST00000437607 GP5P40197 560 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SLC1A2P43004 574 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SLCO1A2P46721 670 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 ARCN1P48444 511 aaKnown RBP11.96□□□□□ -0.49
PTPRF-208ENST00000437607 SPINT3P49223 89 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 KIAA1024LP59773 190 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 NFKB2Q00653 900 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 PTPRCAPQ14761 206 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 TMED2Q15363 201 aa11.96□□□□□ -0.49
PTPRF-208ENST00000437607 FASTKD1Q53R41 847 aaKnown RBP11.96□□□□□ -0.49
PTPRF-208ENST00000437607 HSP90B2PQ58FF3 399 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms