RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GALNTL6Q49A17 601 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 ZNF658BQ4V348 819 aaPredicted RBP13.8□□□□□ -0.2
GPNMB-203ENST00000409458 SYTL3Q4VX76 610 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 TMEM259Q4ZIN3 620 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 SLC9B1Q4ZJI4 515 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 KIAA1161Q6NSJ0 714 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 GPR153Q6NV75 609 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 FAM124AQ86V42 546 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 ZNF483Q8TF39 744 aaPredicted RBP13.8□□□□□ -0.2
GPNMB-203ENST00000409458 ESAMQ96AP7 390 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 C1QTNF3Q9BXJ4 246 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 EPHX3Q9H6B9 360 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 TRIM39Q9HCM9 518 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 PRDM6Q9NQX0 595 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 EIF2B4Q9UI10 523 aaKnown RBP13.8□□□□□ -0.2
GPNMB-203ENST00000409458 ZFP69BQ9UJL9 534 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 PCTPQ9UKL6 214 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 FZD4Q9ULV1 537 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 NUMA1Q14980 2115 aa13.8□□□□□ -0.2
GPNMB-203ENST00000409458 PPP6CO00743 305 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 HDAC3O15379 428 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 DIAPH2O60879 1101 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 GUCA1CO95843 209 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 S100BP04271 92 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ZNF8P17098 575 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PREPP48147 710 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PPP2CBP62714 309 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PPP2CAP67775 309 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 GTF2H3Q13889 308 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PDCD2Q16342 344 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 LACTB2Q53H82 288 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ANKS6Q68DC2 871 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 EPGNQ6UW88 154 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 MBOAT1Q6ZNC8 495 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 USP30Q70CQ3 517 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 TRAPPC5Q8IUR0 188 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 LILRA3Q8N6C8 439 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 TRPC4APQ8TEL6 797 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 SKA2Q8WVK7 121 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 RILPQ96NA2 401 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 LGR4Q9BXB1 951 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 C1QTNF2Q9BXJ5 285 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 NMUR2Q9GZQ4 415 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PREBQ9HCU5 417 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 TMEM98Q9Y2Y6 226 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 FIS1Q9Y3D6 152 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PCYT1BQ9Y5K3 369 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 SLC5A10A0PJK1 596 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 E2F3O00716 465 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 MAN2B1O00754 1011 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 SLCO2B1O94956 709 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PAK4O96013 591 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 CHRNB1P11230 501 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ACADMP11310 421 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 VCLP18206 1134 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 GABRG2P18507 467 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 SH3BP2P78314 561 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 CLCQ05315 142 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PUS10Q3MIT2 529 aaKnown RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PLA2G4EQ3MJ16 856 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 DOK6Q6PKX4 331 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 CRTC3Q6UUV7 619 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ZNF852Q6ZMS4 543 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 NEK10Q6ZWH5 1172 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 UBE2R2Q712K3 238 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 CLNKQ7Z7G1 428 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 KBTBD6Q86V97 674 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 HORMAD1Q86X24 394 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ZNF547Q8IVP9 402 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ZNF687Q8N1G0 1237 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 GBP7Q8N8V2 638 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 FLCNQ8NFG4 579 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ASZ1Q8WWH4 475 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 GLMNQ92990 594 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 PPP1R36Q96LQ0 422 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 TMEM79Q9BSE2 394 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 NUF2Q9BZD4 464 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 RDH14Q9HBH5 336 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 ZBTB26Q9HCK0 441 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 SEMA4BQ9NPR2 832 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-203ENST00000409458 GULP1Q9UBP9 304 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 VTI1BQ9UEU0 232 aa13.79□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3DA0A087WVF3 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3IA0A087WXS9 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3EA0A087X179 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3KA0A087X1G2 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 A0A1B0GTL3 188 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3FA6NER0 549 aaPredicted RBP13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3LB9A6J9 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 SLCO1B7G3V0H7 640 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 FCHO1O14526 889 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TAPBPO15533 448 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 VEGFDO43915 354 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 C8GP07360 202 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3HP0C7X1 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TEAD1P28347 426 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 MAT2AP31153 395 aaKnown RBP13.78□□□□□ -0.2
GPNMB-203ENST00000409458 IGFALSP35858 605 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 LCP2Q13094 533 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 SP140Q13342 867 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms