RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TMPRSS9Q7Z410 1059 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 B3GNT8Q7Z7M8 397 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 SLITRK4Q8IW52 837 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 LMNTD2Q8IXW0 634 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 SPDYE1Q8NFV5 336 aaPredicted RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 ELMO1Q92556 727 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 LRRC39Q96DD0 335 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 ATXN7L3BQ96GX2 97 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 LIN37Q96GY3 246 aaPredicted RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 AHCYL2Q96HN2 611 aaKnown RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 RMDN2Q96LZ7 410 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 NUDT22Q9BRQ3 303 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 TUBB2BQ9BVA1 445 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 CARD6Q9BX69 1037 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 P2RY12Q9H244 342 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 OR52A5Q9H2C5 316 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 IMP3Q9NV31 184 aaKnown RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 FAM169AQ9Y6X4 670 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 FRYQ5TBA9 3013 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 PIKFYVEQ9Y2I7 2098 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 BANF1O75531 89 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 CD151P48509 253 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 ARL4CP56559 192 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 PLOD1Q02809 727 aaPredicted RBP21.23■□□□□ 0.99
CLN3-207ENST00000395653 THOC5Q13769 683 aaKnown RBP21.23■□□□□ 0.99
CLN3-207ENST00000395653 CRYMQ14894 314 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 LONRF1Q17RB8 773 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 DUPD1Q68J44 220 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 CILP2Q8IUL8 1156 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLN3-207ENST00000395653 C12orf66Q96MD2 445 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 TBC1D10AQ9BXI6 508 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 FOXP3Q9BZS1 431 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 EPB41L5Q9HCM4 733 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 IL1RAPL1Q9NZN1 696 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 WHRNQ9P202 907 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 GNPTGQ9UJJ9 305 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 VPS9D1Q9Y2B5 631 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 MRFAP1Q9Y605 127 aa21.23■□□□□ 0.99
CLN3-207ENST00000395653 PRAMEF33A0A0G2JMD5 474 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 TMEM8BA6NDV4 472 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 IFRD1O00458 451 aaPredicted RBP21.22■□□□□ 0.99
CLN3-207ENST00000395653 CSF2RBP32927 897 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 ADARP55265 1226 aaKnown RBP21.22■□□□□ 0.99
CLN3-207ENST00000395653 CBLBQ13191 982 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 GPR18Q14330 331 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 TMEM71Q6P5X7 295 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 OR4D9Q8NGE8 314 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 KIF18AQ8NI77 898 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 CALML6Q8TD86 181 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 ZFPM2Q8WW38 1151 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 LPGAT1Q92604 370 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 CNTNAP3BQ96NU0 1288 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 PANX3Q96QZ0 392 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 CNTNAP3Q9BZ76 1288 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 STRADBQ9C0K7 418 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 RAB17Q9H0T7 212 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 C20orf96Q9NUD7 363 aaPredicted RBP21.22■□□□□ 0.99
CLN3-207ENST00000395653 INTS10Q9NVR2 710 aaKnown RBP21.22■□□□□ 0.99
CLN3-207ENST00000395653 DKK4Q9UBT3 224 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 UTP11Q9Y3A2 253 aaKnown RBP21.22■□□□□ 0.99
CLN3-207ENST00000395653 HEBP2Q9Y5Z4 205 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 CFAP20Q9Y6A4 193 aaKnown RBP21.22■□□□□ 0.99
CLN3-207ENST00000395653 UNC13CQ8NB66 2214 aa21.22■□□□□ 0.99
CLN3-207ENST00000395653 CCDC187A0A096LP49 1063 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 UBA6A0AVT1 1052 aaPredicted RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 SLC5A10A0PJK1 596 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 UBXN7O94888 489 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 PROS1P07225 676 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 PDHA2P29803 388 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 PREPP48147 710 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 PPM1FP49593 454 aaPredicted RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 CFHR1Q03591 330 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 CALCOCO2Q13137 446 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 EIF3IQ13347 325 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 BOP1Q14137 746 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 SYTL3Q4VX76 610 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 SPANXN3Q5MJ09 141 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 ZNF470Q6ECI4 717 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 PTRHD1Q6GMV3 140 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 WDR74Q6RFH5 385 aaPredicted RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 ZNF574Q6ZN55 896 aaPredicted RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 CENPUQ71F23 418 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 PWWP2AQ96N64 755 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 DPH5Q9H2P9 285 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 TEX264Q9Y6I9 313 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 COLEC10Q9Y6Z7 277 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 TPRP12270 2363 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 WDFY3Q8IZQ1 3526 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 CAPNS1P04632 268 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 NDUFS1P28331 727 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 ELK3P41970 407 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 LIMK2P53671 638 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 EIF3BP55884 814 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 TRA2AQ13595 282 aaKnown RBP eCLIP21.21■□□□□ 0.99
CLN3-207ENST00000395653 DUS1LQ6P1R4 473 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 PDZD3Q86UT5 571 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 IGDCC3Q8IVU1 814 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 WDR36Q8NI36 951 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 LKAAEAR1Q8TD35 194 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms